Locus 5358

Sequence ID 2R_DroMel_CAF1
Location 17,300,575 – 17,300,665
Length 90
Max. P 0.565273
window8562

overview

Window 2

Location 17,300,575 – 17,300,665
Length 90
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 89.13
Mean single sequence MFE -9.33
Consensus MFE -7.05
Energy contribution -7.55
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.565273
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17300575 90 + 20766785
UCAUUCAACACUCACACAUCCUG-AUUAAUGAACAUUUUUAUAAGCAACUCAAACGCAUAACUAUGCCAUAAUAAAUAUGUGCGCCAUUUA
..............(((((....-(((((((((....))))).............((((....))))..))))....)))))......... (  -7.10)
>DroSec_CAF1 24616 86 + 1
UCAUUCUACACUCACACAUACUG-AUUAAUGAACAUUUUUAUAAACAACUCGAACGCAUAACUAUGCCAUAACAAAUAUGUGUG----UUA
............((((((((...-....(((((....))))).............((((....)))).........))))))))----... ( -11.50)
>DroSim_CAF1 26515 90 + 1
UCAUUCAACACUCACACAUACUG-AUUAAUGAACAUUUUUAUAAACAACUCGAACGCAUAACUAUGCCAUAACAAAUAUGUGUGCCAUUUA
............((((((((...-....(((((....))))).............((((....)))).........))))))))....... ( -11.30)
>DroYak_CAF1 3204 91 + 1
UUAUUUGACAUUCACACAUCCCGAAUCAAUGAACACUUUUAUAACCAACUCAAACGCAUAACUAUGCCAUAACAAAUAUGUGAGCCAUUUA
..........((((((............(((((....))))).............((((....))))...........))))))....... (  -7.40)
>consensus
UCAUUCAACACUCACACAUACUG_AUUAAUGAACAUUUUUAUAAACAACUCAAACGCAUAACUAUGCCAUAACAAAUAUGUGUGCCAUUUA
............(((((((.........(((((....))))).............((((....))))..........)))))))....... ( -7.05 =  -7.55 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:01 2006