Locus 5356

Sequence ID 2R_DroMel_CAF1
Location 17,295,832 – 17,295,928
Length 96
Max. P 0.904870
window8559

overview

Window 9

Location 17,295,832 – 17,295,928
Length 96
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -20.71
Consensus MFE -18.99
Energy contribution -19.19
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.77
Structure conservation index 0.92
SVM decision value 1.04
SVM RNA-class probability 0.904870
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17295832 96 - 20766785
UCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA---UG---------------------C
.....(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...((((....)))).....---..---------------------. ( -20.42)
>DroPse_CAF1 22479 117 - 1
UCCAUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGGAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA---UCCAUCGUCCUACUCCUCGUUUCC
....((((((.((((.......(((((((((..(((.....))).)))))))))........)))).))).))).((.(((............---......)))))............. ( -21.33)
>DroSim_CAF1 21844 96 - 1
UCCCAGGUAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA---UG---------------------C
.....(((((.((((......((((((((((..(((.....))).)))))))))).......)))).)).)))...((((....)))).....---..---------------------. ( -18.42)
>DroEre_CAF1 16014 99 - 1
UCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCCUGAUC---------------------C
...(((((((.((((......((((((((((..(((.....))).)))))))))).......)))).)))......((((....))))...))))...---------------------. ( -21.72)
>DroAna_CAF1 6691 96 - 1
UCCCUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA---UC---------------------C
....((((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).)))..((((....)))).....---..---------------------. ( -21.02)
>DroPer_CAF1 22340 117 - 1
UCCAUGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGGAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA---UCCAUCGUCCUACUCCUCGUUUCC
....((((((.((((.......(((((((((..(((.....))).)))))))))........)))).))).))).((.(((............---......)))))............. ( -21.33)
>consensus
UCCCAGGCAUUAAGCAAUCAAACGUUUGAUUUUCAUUUAUCGUGUAAUCAAGCGUAAAAAUAGCUUCGUGACCAAAGUGACUCAUCAUCAUCA___UC_____________________C
.....(((((.((((......((((((((((..(((.....))).)))))))))).......)))).))).))...((((....))))................................ (-18.99 = -19.19 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:58 2006