Locus 5355

Sequence ID 2R_DroMel_CAF1
Location 17,294,593 – 17,294,706
Length 113
Max. P 0.976194
window8558

overview

Window 8

Location 17,294,593 – 17,294,706
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 95.13
Mean single sequence MFE -36.58
Consensus MFE -33.22
Energy contribution -33.85
Covariance contribution 0.63
Combinations/Pair 1.06
Mean z-score -3.96
Structure conservation index 0.91
SVM decision value 1.77
SVM RNA-class probability 0.976194
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17294593 113 + 20766785
GCAUUUGCCGUUUUAUGACAGUUUUUAAAGCAAUUUUCUAUGAGUGUAAAUUUGGUAUAAGUUGGUCCUUUGCGGCCGGAAUUUACACUUAUUUUGUUGCGGCAAGUGGACCA
.(((((((((((....)))..........(((((.....(((((((((((((((((..(((......)))....))).))))))))))))))...)))))))))))))..... ( -37.60)
>DroSec_CAF1 18898 113 + 1
CCAUUUGCCGUUUUAUGACUGUUUUUAAAGCAAUUUUCUAUGAGUGUAAAUUUGGUAUAAGUUGGUCCUUUGCGGCCGGAAUUUACACUUAUUUUGUUGUGGCAAGUGGAACA
((((((((((((....)))..........(((((.....(((((((((((((((((..(((......)))....))).))))))))))))))...)))))))))))))).... ( -37.40)
>DroSim_CAF1 20666 113 + 1
CCAUUUGCCGUUUUAUGACAGUUUUUAAAGCAAUUUUCCAUGAGUGUAAAUUUGGGAUAAGUUGGUCCUUUGCGGCCGGAAUUUACACUUAUUUUGUUGCGGCAAGUGGACCA
((((((((((((....)))..........(((((.....((((((((((((((.((....((.........))..)).))))))))))))))...)))))))))))))).... ( -40.80)
>DroEre_CAF1 14740 112 + 1
CCAUUUGCAGUUUUAUGACAGUUUUUAAAGCAAUU-UCUGUGAGUGUAAAUUUGGUAUAAGUUGGUCCUUUGCGGCCGGAAUUUACACUUAUUUUGUUGCGACAAGUGCACCA
.(((((((.(((....)))..........(((((.-...(((((((((((((((((..(((......)))....))).))))))))))))))...)))))).))))))..... ( -30.50)
>consensus
CCAUUUGCCGUUUUAUGACAGUUUUUAAAGCAAUUUUCUAUGAGUGUAAAUUUGGUAUAAGUUGGUCCUUUGCGGCCGGAAUUUACACUUAUUUUGUUGCGGCAAGUGGACCA
((((((((((((....)))..........(((((.....((((((((((((((.........(((((......)))))))))))))))))))...)))))))))))))).... (-33.22 = -33.85 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:57 2006