Locus 5354

Sequence ID 2R_DroMel_CAF1
Location 17,294,325 – 17,294,422
Length 97
Max. P 0.663689
window8557

overview

Window 7

Location 17,294,325 – 17,294,422
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 92.39
Mean single sequence MFE -23.10
Consensus MFE -20.55
Energy contribution -21.00
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.87
Structure conservation index 0.89
SVM decision value 0.27
SVM RNA-class probability 0.663689
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17294325 97 - 20766785
CGAGGACUUGGCCAUACCAAACGACCAUAUGUGUGUCACUUUGACCCACUGCACCAGCGCCCAACCACCCACUUUGCACACCAUGGCCAUGUCGUUU
.((.(((.(((((((...............(((.(((.....))).))).((....))........................))))))).))).)). ( -23.70)
>DroSec_CAF1 18628 95 - 1
CGAGGACUUGGCCAUACCAUACGACCAUAUGUGUGUCACUUUGACCCACUGCAAU-GCAAGC-ACCACCCCCUUUGCACACCAUGGCCAUGUCGUUU
.((.(((.(((((((...............(((.(((.....))).))).....(-(((((.-.........))))))....))))))).))).)). ( -25.80)
>DroSim_CAF1 20395 95 - 1
CGAGCACUUGGCCCUACCAUACGACCAUAUGUGUGUCACUUUGACCCACUGCACU-GCAACC-ACCACCCCCUUUGCACACCAUGGCCAUGUCGUUU
.((((((.(((((.................(((.(((.....))).))).....(-((((..-..........)))))......))))).)).)))) ( -19.80)
>consensus
CGAGGACUUGGCCAUACCAUACGACCAUAUGUGUGUCACUUUGACCCACUGCACU_GCAACC_ACCACCCCCUUUGCACACCAUGGCCAUGUCGUUU
.((.(((.(((((((...............(((.(((.....))).)))(((....))).......................))))))).))).)). (-20.55 = -21.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:56 2006