Locus 5353

Sequence ID 2R_DroMel_CAF1
Location 17,294,033 – 17,294,148
Length 115
Max. P 0.946090
window8556

overview

Window 6

Location 17,294,033 – 17,294,148
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.04
Mean single sequence MFE -32.68
Consensus MFE -25.66
Energy contribution -26.94
Covariance contribution 1.28
Combinations/Pair 1.18
Mean z-score -2.24
Structure conservation index 0.79
SVM decision value 1.36
SVM RNA-class probability 0.946090
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17294033 115 + 20766785
CGAAACA-CGAUAAUUGCGGCCAUCAACAGAGGAGAUUUCUCCAUUUUCGUUUGGAAUUUUGUGGCC---CGGCU-GGCAAAUGUUUACAAAAUGUUGGUCAGCUGCAAAUUCAAUCGAA
.......-((((..(((((((((.(((....((((....))))...(((.....)))..))))))))---.((((-(((.((((((.....)))))).))))))))))).....)))).. ( -34.00)
>DroSec_CAF1 18336 115 + 1
CGAAACA-CGAUAAUUGCGGCCAUCAACAAGGGAGAUUUCUCCAUUUUCGUUUGGAAUUUUGUGGCC---CGGCU-GGCAAAUGUUUACAAAAUGUUGGUCAGCUGCAAAUUCAAUCGAA
.......-((((..(((((((((.(((....((((....))))...(((.....)))..))))))))---.((((-(((.((((((.....)))))).))))))))))).....)))).. ( -33.80)
>DroSim_CAF1 20103 115 + 1
CGAAACA-CGAUAAUUGCGGCCAUCAACAAAGGAGAUUUCUCCAUUUUCGUUUGGAAUUUUGUGGCC---CGGCU-GGCAAAUGUUUACAAAAUGUUGGUCAGCUGCAAAUUCAAUCGAA
.......-((((..(((((((((.(((....((((....))))...(((.....)))..))))))))---.((((-(((.((((((.....)))))).))))))))))).....)))).. ( -34.00)
>DroEre_CAF1 14180 116 + 1
CGAAACA-CGAUAAUUGCGGCCAUCAGCAAAGGAGAUUUCUCCAUUUUCGUUUGGAAUUUUGCAGCC---CGGCCGGGCAAAUGUUUACAAAAUGUUGGUCAGCUGCAAAUUCAAUCGAA
(((...(-(((...((((........)))).((((....))))....))))...((((((.(((((.---.((((((.((..((....))...)))))))).)))))))))))..))).. ( -34.50)
>DroAna_CAF1 5289 105 + 1
CGAUUCUCCGAUAAUUGCACACAUCAUCGAAGAAAAUG--------------CGAUAUUUUGCAGCCGACUGGCU-GGCAAAUGUUUACCAAAUGUUGGUCAGUUGCAAAUUCAAUUGAA
...((((.((((...((....))..)))).))))..((--------------(((....)))))((.(((((((.-.(((..((.....))..)))..)))))))))............. ( -27.10)
>consensus
CGAAACA_CGAUAAUUGCGGCCAUCAACAAAGGAGAUUUCUCCAUUUUCGUUUGGAAUUUUGUGGCC___CGGCU_GGCAAAUGUUUACAAAAUGUUGGUCAGCUGCAAAUUCAAUCGAA
........((((..(((((((.(((((((..((((....)))).......(((((((((((((((((....))))..))))).)))).)))).)))))))..))))))).....)))).. (-25.66 = -26.94 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:55 2006