Locus 5352

Sequence ID 2R_DroMel_CAF1
Location 17,290,622 – 17,290,713
Length 91
Max. P 0.842119
window8555

overview

Window 5

Location 17,290,622 – 17,290,713
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.05
Mean single sequence MFE -28.80
Consensus MFE -15.06
Energy contribution -16.78
Covariance contribution 1.72
Combinations/Pair 1.17
Mean z-score -2.05
Structure conservation index 0.52
SVM decision value 0.75
SVM RNA-class probability 0.842119
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17290622 91 - 20766785
GUGCCCAA-------------------------AUAUUGAGUCAUAAAACGAGACUUGAUUGGAAGGCGACGUGGGCGCAAA-A---UUUGCAAGGAGUCUGCGGGAUAAGUGCAACUAA
(((((((.-------------------------..((..((((.........))))..)).....(....).)))))))...-.---.(((((....(((.....)))...))))).... ( -25.10)
>DroSec_CAF1 14958 91 - 1
GUGCCCAA-------------------------AUAUUGAGUCAUAAAACGAGGCUUGAUUGGAAGGCGACGUGGGCGCAAA-A---GUUGCAAGGAGUCUGCGGGAUAAGUGCAACUAA
(((((((.-------------------------..((..((((.........))))..)).....(....).)))))))...-(---((((((....(((.....)))...))))))).. ( -29.10)
>DroSim_CAF1 16667 91 - 1
GUGCCCAA-------------------------AUAUUGAGUCAUAAAACGAGGCUUGAUUGGAAGGCGACGUGGGCGCAAA-A---GUUGCAAGGAGUCUGCGGGAUAAGUGCAACUAA
(((((((.-------------------------..((..((((.........))))..)).....(....).)))))))...-(---((((((....(((.....)))...))))))).. ( -29.10)
>DroEre_CAF1 10725 90 - 1
AUGC-CAA-------------------------AUAUUGAGUCAUAAAACGAGGCUUGAUUGCAAGGAGACGUGGGCUGAAA-A---GUUGCAAGCAGUCUGUGGGAUAAGUGCAACUAA
..((-(..-------------------------..((..((((.........))))..))..((.(....).))))).....-(---((((((....(((.....)))...))))))).. ( -22.60)
>DroAna_CAF1 1984 98 - 1
GUGGCAGACUCG---------------------GUAUUGAGUCAUAAAACGCGGCUUGAUUGGAAGGCGACGUGGGCGCAGA-UAGUCUGGCAAGGAGUCUGUGGGAUAGGUGCAACUAA
.(.((((((((.---------------------...............(((((.(((......))).)).)))..((.(((.-....)))))...)))))))).)..(((......))). ( -27.60)
>DroPer_CAF1 16667 120 - 1
GUGGCUGUGCUGGUAGCGGGGAGCAUUGAGGGCCUAUUGAGUCAUAAAACGUGGCUUGAUUGGAACGCGACGUGGGCGAGAGGCGUUGCCGCGGGAAGACUGUAGGAUAAGUGCAACUAA
.(((.((..((((((((.....((.(((.(..((.((..((((((.....))))))..)).))..).))).)).(.(....).)))))))((((.....))))......))..)).))). ( -39.30)
>consensus
GUGCCCAA_________________________AUAUUGAGUCAUAAAACGAGGCUUGAUUGGAAGGCGACGUGGGCGCAAA_A___GUUGCAAGGAGUCUGCGGGAUAAGUGCAACUAA
(((((((............................((..((((.........))))..)).....(....).)))))))........((((((....(((.....)))...))))))... (-15.06 = -16.78 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:54 2006