| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,289,952 – 17,290,050 |
| Length | 98 |
| Max. P | 0.993591 |
| Location | 17,289,952 – 17,290,050 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 72.95 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -19.43 |
| Energy contribution | -18.77 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| SVM decision value | 2.41 |
| SVM RNA-class probability | 0.993591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17289952 98 - 20766785 GGCUGAGA-AAAGCGGUCGGAUAGGCUGGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAA-AAUGGCAAACGCUCGCACACAUAUAUAUAUAGAUAU .((.(((.-....(((((.....))))).(((((((((((...(((((....)))))..))).-..)))))))).))))).................... ( -24.10) >DroEre_CAF1 10077 80 - 1 GGCUGAGAGAAAGUGGGCGGAUAGGCUGGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAA-AAUGGCAAACUCUCGCA------------------- .((.(((((.....(((((.((((((...)))))))))))............((((((.....-...))))))))))))).------------------- ( -24.40) >DroAna_CAF1 1509 81 - 1 GCCCGGGAACGGGAGGGUGGACA-CCCGGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAAAAAUGGCAAACUCUCUCGC------------------ .((((....)))).((((....)-)))(((((((((((((...(((((....)))))..)))....))))))))))......------------------ ( -31.50) >consensus GGCUGAGA_AAAGAGGGCGGAUAGGCUGGGUUUGUCGUCCUUUGUAAACUAAUUUGCUUGGAA_AAUGGCAAACUCUCGCAC__________________ ............((((((((.....))).(((((((((((...(((((....)))))..)))....)))))))).))))).................... (-19.43 = -18.77 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:50 2006