Locus 5346

Sequence ID 2R_DroMel_CAF1
Location 17,288,716 – 17,288,808
Length 92
Max. P 0.999079
window8540

overview

Window 0

Location 17,288,716 – 17,288,808
Length 92
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 75.16
Mean single sequence MFE -22.31
Consensus MFE -14.77
Energy contribution -17.73
Covariance contribution 2.96
Combinations/Pair 1.12
Mean z-score -2.81
Structure conservation index 0.66
SVM decision value 3.36
SVM RNA-class probability 0.999079
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17288716 92 + 20766785
UGUCUUUUAUGAUGUUGGUUUUGGGCAGCGAUAAAAAA----AA------AAAAAAAAAUGCUGUUGCCAAAAGAAACCGUUCGUAAAAGGUCCAUUAUAAU
..((((((((((...(((((((.(((((((........----..------............)))))))....))))))).))))))))))........... ( -25.05)
>DroSec_CAF1 13107 71 + 1
UG------------UUGGUUUUGGGCAGCGACAAAA-------------------AAAGUGCUGUUGCCAAAAGAAACCGUUCGUAAAAGGUCCAUUAUAAU
..------------..((((((.(((((((.((...-------------------....)).)))))))....))))))....................... ( -17.20)
>DroSim_CAF1 14802 84 + 1
UGUCUUUUAUGAUGUUGGUUUUGGGCAGCGACAAAA------------------AAAAGUGCUGUUGCCAAAAGAAACCGUUCGUAAAAGGUCCAUUAUAAU
..((((((((((...(((((((.(((((((.((...------------------.....)).)))))))....))))))).))))))))))........... ( -27.60)
>DroEre_CAF1 8847 82 + 1
UGUCUUUUAUGAUGUUGGUUUUGGGCAGCGAACA--------------------AAAAAUGAUGUUGCCAAAAGAAACCGUUCGUAAAGGGUCCAUUAUAAU
..((((((((((...(((((((.(((((((..((--------------------.....)).)))))))....))))))).))))))))))........... ( -25.20)
>DroAna_CAF1 583 94 + 1
UGUCUUUUAUGAUGUUGGC------CAAAAAAAAAG--GCGCAAAGGAUGGGAAAAAAUUGAUGUUGCCAAAGGGAACCGUUCGUAAAAGGUCCAUUACAAU
..((((((((....(((((------(.........)--)).))).((((((.......(((.......)))......))))))))))))))........... ( -16.52)
>consensus
UGUCUUUUAUGAUGUUGGUUUUGGGCAGCGAAAAAA__________________AAAAAUGCUGUUGCCAAAAGAAACCGUUCGUAAAAGGUCCAUUAUAAU
..((((((((((...(((((((.(((((((................................)))))))....))))))).))))))))))........... (-14.77 = -17.73 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:40 2006