Locus 5345

Sequence ID 2R_DroMel_CAF1
Location 17,284,513 – 17,284,623
Length 110
Max. P 0.601138
window8539

overview

Window 9

Location 17,284,513 – 17,284,623
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 66.98
Mean single sequence MFE -23.00
Consensus MFE -5.64
Energy contribution -5.62
Covariance contribution -0.03
Combinations/Pair 1.31
Mean z-score -2.09
Structure conservation index 0.25
SVM decision value 0.14
SVM RNA-class probability 0.601138
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17284513 110 - 20766785
CACACCAUAUAAACAUAUAUAU--UUCUACGGCCCACUUUGGUAUAUACAU--------AUGCAUACUUGUAUUUGUUUCACAUAUGUCGACCGUCAGCUGGGGCAUCCGUAUGCCCAAA
......................--.....((((..((.(((..(((((((.--------(((((....))))).))).....))))..)))..))..))))((((((....))))))... ( -23.70)
>DroPse_CAF1 10842 92 - 1
CACACCAUAUAAACAUA--UACGAGUGUAUCCCCAUAUCUCACAUAUACA--------------------------AUACACAUGUGUUCACACUUUGUCGGGACAUGUGUGUGCCUCUG
.(((((.((((....))--)).).))))......................--------------------------.(((((((((((((.(........))))))))))))))...... ( -18.70)
>DroSec_CAF1 7633 108 - 1
CACACCAUAUAAACAUA--UAU--UUCUCCGGCCCACUUCAGUAUAUAUGU----ACAUA----UACUUGUAUUUGUUUCACAUAUGUGGACCGUCAGCUGGGGCAUCCGUAUGCCCAAA
.................--...--.....(((.((((....((..(((.((----(((..----....))))).)))...))....)))).))).......((((((....))))))... ( -24.10)
>DroSim_CAF1 9634 112 - 1
CACACCAUAUAAACAUA--UAU--UUCUCCGGCCCACUUCAGUAUAUAUGU----ACAUAUGCAUACUUGUAUUUGUUUCACAUAUCUGGACCGUCAGCUGGGGCAUCCGUAUGCCCAAA
.................--...--.....((((..(((((((.((((.((.----(((.(((((....))))).)))..)).)))))))))..))..))))((((((....))))))... ( -27.30)
>DroEre_CAF1 4116 114 - 1
CACACCAUAUAAACAUA--UA----UCUCCGGCACACUUCAGUAUAUACAUAUGUAUGUAUAUAUACUUAUAUUUGUUUCACAUAUGUGGGCCGUCAGCUGGCGCAUCCGUAUGCCCAAA
.................--..----....((((........((((((((((....)))))))))).............((((....)))))))).....(((.((((....))))))).. ( -24.20)
>DroPer_CAF1 10726 92 - 1
CACACCAUAUAAACAUA--UACGAGUGUAUCCCCAUAUCUCGCAUAUACA--------------------------AUACACAUGUGUGCACACUUUGUCGGGACAUGUGUGUGCCUCUG
((((((((....((((.--.....)))).((((.(((....(((((((..--------------------------.......)))))))......))).)))).))).)))))...... ( -20.00)
>consensus
CACACCAUAUAAACAUA__UAU__UUCUACGGCCCACUUCAGUAUAUACAU________A____UACUUGUAUUUGUUUCACAUAUGUGGACCGUCAGCUGGGGCAUCCGUAUGCCCAAA
.........................................((((((..............................(((((....)))))......((....))....))))))..... ( -5.64 =  -5.62 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:39 2006