Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,284,064 – 17,284,173 |
Length | 109 |
Max. P | 0.878762 |
Location | 17,284,064 – 17,284,173 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.59 |
Mean single sequence MFE | -39.55 |
Consensus MFE | -32.90 |
Energy contribution | -32.32 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.21 |
Mean z-score | -2.23 |
Structure conservation index | 0.83 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.878762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17284064 109 - 20766785 CGUUGGAGUUGCCCAAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGCGA-GCGGCCUUCUCUGGCCAAAACCAGCCGCAAAAGGUGACUUUGACUGGGU---GGUCG------- .....((.(..((((..((((((.......(((((((((((((.........)).-))((((......))))......))))))))).(....))))))))))).---.))).------- ( -39.40) >DroPse_CAF1 10364 119 - 1 CGUUGGAGUUGCCAAAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGUGAAACGGCUUUUGCCUGCCUAACCCAGCCACAA-AGGUGACUUUGAUUGGAUACAAGUUGGGGGGCU ((((((....(((..(((((........)))))..)))..))))))............(((....))).((((..((((((..(((-((....))))).(((....))))))))))))). ( -41.00) >DroSec_CAF1 7195 112 - 1 CGUUGAAGUUGCCCGAAGUCAAAUAAAAGAUUUGCGGUUGCGAAUGAAUAAGCGA-GCGGCCUUCUCUGGCCAAAACCAGCCGCAAAAGGUGACUUUGACUGGGUGGUGGUCG------- ....((.(..((((..(((((((.......((((((((((.(.........(...-.)((((......))))....))))))))))).(....))))))))))))..)..)).------- ( -39.20) >DroSim_CAF1 9187 112 - 1 CGUUGAAGUCGCCCGAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGCGA-GCGGCCUUCCCUGGCCAAAACCAGCCGCAAAAGGUGACUUUGACUGGGUGGUGGUCG------- ....((..((((((..(((((((.......(((((((((((((.........)).-))((((......))))......))))))))).(....))))))))))))))...)).------- ( -40.70) >DroEre_CAF1 3669 109 - 1 CGUUGGAGUUGCCCGAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGCGA-GCGGCUUUCCCUGGCCAAAACCAGCCGCAAUAGGUGACUUUGACUUGG---UGGUCG------- .((..((((..((..(((((........)))))((((((((((.........)).-))((((......))))......))))))....))..))))..))....---......------- ( -35.50) >DroPer_CAF1 10248 119 - 1 CGUUGGAGUUGCCAAAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGUGAAACGGCUUUUGCCUGCCUAACCCGGCCACAA-AGGUGACUUUGAUUGGAUACAAGGUGGGGGGCU ((((((....(((..(((((........)))))..)))..))))))............(((....))).(((...(((.(((.(((-((....))))).(((....)))))).)))))). ( -41.50) >consensus CGUUGGAGUUGCCCAAAGUCAAAUAAAAGAUUUGCGGUUGCCGAUGAAUAAGCGA_GCGGCCUUCCCUGGCCAAAACCAGCCGCAAAAGGUGACUUUGACUGGGU__UGGUCG_______ .((..((((((((..(((((........)))))(((((((...........((...))((((......)))).....)))))))....))))))))..)).................... (-32.90 = -32.32 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:38 2006