Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,282,644 – 17,282,750 |
Length | 106 |
Max. P | 0.527325 |
Location | 17,282,644 – 17,282,750 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.62 |
Mean single sequence MFE | -19.97 |
Consensus MFE | -7.80 |
Energy contribution | -7.58 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.21 |
Mean z-score | -1.80 |
Structure conservation index | 0.39 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17282644 106 + 20766785 AACUAUUAGGUCUUUACCUAAACACUUAAUGCAAGUGGCG----UUAAGUGUUUAAGCU---------UUAAUUAAUCAAUACGUCUCGGUCUUUUGAUUAGAAAUUCCC-ACUUGUCAG ..((..(((((.......((((((((((((((.....)))----)))))))))))....---------....((((((((.((......))...))))))))........-)))))..)) ( -24.20) >DroPse_CAF1 8589 106 + 1 CCCUAU-------------AAUAACUGCA-UCAAUUGGAGCUUCUGAAGUGAUUAAAUUUCUGUUAAUCCCAUCAAUCAAUACGUUCUGCUCUUUCCACUUGAAAUACCCCUUUUCUCAG ......-------------..........-((((.(((((....(((.(.((((((.......)))))).).)))........(.....)...))))).))))................. ( -10.70) >DroSec_CAF1 5801 106 + 1 AACUAUUAAGUCUUUACCCAAACACUUAAUGCAAGUGGCG----UUAAGUGUUUAAGCU---------CUAAUUAAUCAAUAUCUUUCGGUCUUUUGAUUAGAAAUUCCC-ACUUGUCAG ..((..(((((........(((((((((((((.....)))----))))))))))....(---------((((((((.....(((....)))...))))))))).......-)))))..)) ( -24.50) >DroSim_CAF1 7782 106 + 1 AACUAUUAAGUCUUUACCCAAACACUUAAUGCAAGUGGCG----UUAAGUGUUUAAGCU---------CUAAUUAAUCAAUAUCUUUCGGUCUUUUGAUUAGAAAUUCCC-ACUUGUCAG ..((..(((((........(((((((((((((.....)))----))))))))))....(---------((((((((.....(((....)))...))))))))).......-)))))..)) ( -24.50) >DroEre_CAF1 2300 106 + 1 GACUAUUAAGACUUUACCCAAACACUUAAUGCAAGUGGCG----UUAAGUGUUUAAGCU---------CUAAUUAAUCAAUAUCUCUCGGUCUUUUGAUUAGAAAUUCCC-ACUUGUCAG .........(((.......(((((((((((((.....)))----))))))))))....(---------((((((((.....(((....)))...))))))))).......-....))).. ( -25.20) >DroPer_CAF1 8482 106 + 1 CCCUAU-------------AAUAACUGCA-UCAAUUGGAGCUUCUGAAGUGAUUAAAUUUCUGUUAAUCCCAUCAAUCAAUACGUUCUGCUCUUUCCACUUGAAAUACCCCUUUUCUCAG ......-------------..........-((((.(((((....(((.(.((((((.......)))))).).)))........(.....)...))))).))))................. ( -10.70) >consensus AACUAUUAAGUCUUUACCCAAACACUUAAUGCAAGUGGCG____UUAAGUGUUUAAGCU_________CUAAUUAAUCAAUACCUUUCGGUCUUUUGAUUAGAAAUUCCC_ACUUGUCAG ...................(((((((((((((.....)))....))))))))))..................................((..((((.....))))..))........... ( -7.80 = -7.58 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:37 2006