Locus 5341

Sequence ID 2R_DroMel_CAF1
Location 17,280,086 – 17,280,198
Length 112
Max. P 0.725967
window8535

overview

Window 5

Location 17,280,086 – 17,280,198
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 96.43
Mean single sequence MFE -31.61
Consensus MFE -29.74
Energy contribution -30.24
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.94
SVM decision value 0.41
SVM RNA-class probability 0.725967
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17280086 112 - 20766785
GCUAGUCGUGUGAAACAAAGCCGAGCACAUGCGACCUGCAGCUUGAUUUGGUAACACAUAUUUGACACAUGUCAGACCAACAAUGCUUGGAGCAAAAGGUCAAACUCAGGCA
((..((((((((...............))))))))..)).((((((................((((....))))((((.....(((.....)))...))))....)))))). ( -30.56)
>DroSec_CAF1 3131 112 - 1
GCUAGUCGUGUGAAACAAAGGCGAGCACAUGCGACCUGCAGCUUGAUUUGGUAACACAUAUUUGACACAUGUCAGGCCAACAAUGCUUGGCGCAAAAGGUCAAACUCAGGCA
((..((((((((...............))))))))..)).((((((..((......))..((((((...((((((((.......))))))))......)))))).)))))). ( -32.96)
>DroSim_CAF1 5125 112 - 1
GCUAGUCGUGUGAAACAAAGGCGAGCACAUGCGACCUGCAGCUUGAUUUGGUAACACAUAUUUGACACAUGUCAGGCCAACAAUGUUUGGCGCAAAAGGUCAAACUCAGGCA
((..((((((((...............))))))))..)).((((((.(((((.........(((((....))))))))))....(((((((.......))))))))))))). ( -33.46)
>DroEre_CAF1 1525 112 - 1
GCUAGUCGUGUGAAACAAAGGCGAACACAUGCGACCUGCAGCUUGAUUUGGUAACACAUAUUUGACACAUGUCAGGCCAACAAUGCUUGGCAAAAAAGGUCAAACUAAGGCA
((..((((((((...............))))))))..)).((((....((......))..((((((...((((((((.......))))))))......))))))...)))). ( -29.46)
>consensus
GCUAGUCGUGUGAAACAAAGGCGAGCACAUGCGACCUGCAGCUUGAUUUGGUAACACAUAUUUGACACAUGUCAGGCCAACAAUGCUUGGCGCAAAAGGUCAAACUCAGGCA
((..((((((((...............))))))))..)).(((((((((((..........(((((....)))))(((((......)))))........))))).)))))). (-29.74 = -30.24 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:35 2006