Locus 5339

Sequence ID 2R_DroMel_CAF1
Location 17,278,579 – 17,278,693
Length 114
Max. P 0.700950
window8528

overview

Window 8

Location 17,278,579 – 17,278,693
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 97.65
Mean single sequence MFE -27.57
Consensus MFE -27.50
Energy contribution -27.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 1.00
SVM decision value 0.35
SVM RNA-class probability 0.700950
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17278579 114 + 20766785
ACCCAUUAUUAAUACAAACUUAAAUUAAGGCUCAAAUCCAGGCCGCCGUCAUUAUUAGGAUAUGGCAGCAGCGGCAGGAUCAACAGGAAUAAACACAAGCAGCAGGUCCUGCCA
............................((((........))))((.(((((.........))))).))...(((((((((.......................))))))))). ( -27.50)
>DroSec_CAF1 1611 112 + 1
CCCCAUUAUUAAUACAAACUUAAAUUAAGGCUCAAAUCCAGGCCGCCGUCAUUAUCAGGAUAUGGCAGCAGCGGCAGGAUCAACAGGAAUA--CACAAGCAGCAGGUCCUGCCA
............................((((........))))((.(((((.........))))).))...(((((((((..........--...........))))))))). ( -27.60)
>DroSim_CAF1 3594 112 + 1
CCCCAUUAUUAAUACAAACUUAAAUUAAGGCUCAAAUCCAGGCCGCCGUCAUUAUCAGGAUAUGGCAGCAGCGGCAGGAUCAACAGGAAUA--CACAAGCAGCAGGUCCUGCCA
............................((((........))))((.(((((.........))))).))...(((((((((..........--...........))))))))). ( -27.60)
>consensus
CCCCAUUAUUAAUACAAACUUAAAUUAAGGCUCAAAUCCAGGCCGCCGUCAUUAUCAGGAUAUGGCAGCAGCGGCAGGAUCAACAGGAAUA__CACAAGCAGCAGGUCCUGCCA
............................((((........))))((.(((((.........))))).))...(((((((((.......................))))))))). (-27.50 = -27.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:29 2006