Locus 5335

Sequence ID 2R_DroMel_CAF1
Location 17,270,615 – 17,270,735
Length 120
Max. P 0.695003
window8521

overview

Window 1

Location 17,270,615 – 17,270,735
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -33.67
Consensus MFE -29.53
Energy contribution -30.20
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.88
SVM decision value 0.34
SVM RNA-class probability 0.695003
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17270615 120 + 20766785
AGGCUAAACAACUGGCGCUGGCAUCAACAAAAACCGAUUUUCCAAAAAACAGGAAGCGGCAACAGCAGCGCGAAUGUUGGCAAAAUCAGGGGCCCAGUUUUGGGCCACAUCAUCAUUACA
..(((((.((..(.(((((((((((..........))).((((........))))))(....)..)))))).).))))))).........(((((......))))).............. ( -33.70)
>DroSec_CAF1 5635 120 + 1
AGGCUAAACAACUGGCGCUGGCAUCAACAAAAACCGAUUUUCCAAAAAACAGGAAGCGGCAACAGCAGCGCGAAUGUUGGCAAAAUCAGGGGCCCAGUUUUGGGCCACAUCAACAUUACA
..(((((.((..(.(((((((((((..........))).((((........))))))(....)..)))))).).))))))).........(((((......))))).............. ( -33.70)
>DroEre_CAF1 5973 120 + 1
AGGCUAAACAACUGGCGCUGGCAUCAACAAAAACCGAUUUUCCAAAAAACAGGAAGCGGCAACAGCAGCGCGAAUGUUGGCUAAAUCAGGGGCCCAGUUUUGCCCCACAUCAUCAUUACA
.((((((.((..(.(((((((((((..........))).((((........))))))(....)..)))))).).))))))))......(((((........))))).............. ( -33.60)
>consensus
AGGCUAAACAACUGGCGCUGGCAUCAACAAAAACCGAUUUUCCAAAAAACAGGAAGCGGCAACAGCAGCGCGAAUGUUGGCAAAAUCAGGGGCCCAGUUUUGGGCCACAUCAUCAUUACA
..(((((.((..(.(((((((((((..........))).((((........))))))(....)..)))))).).))))))).........(((((......))))).............. (-29.53 = -30.20 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:22 2006