Locus 5334

Sequence ID 2R_DroMel_CAF1
Location 17,268,217 – 17,268,331
Length 114
Max. P 0.644531
window8520

overview

Window 0

Location 17,268,217 – 17,268,331
Length 114
Sequences 3
Columns 114
Reading direction forward
Mean pairwise identity 91.23
Mean single sequence MFE -25.31
Consensus MFE -21.18
Energy contribution -21.27
Covariance contribution 0.08
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.84
SVM decision value 0.23
SVM RNA-class probability 0.644531
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17268217 114 + 20766785
AACUCCCCGUGGGAUCAUCGGUCCAAUCCCCGCCCACAUACAAUGGAAAUUUGAUACCUUGCGAUAGCAAAGCAUUUUAGCUAAACUUUCAACUUUUGGGGUCCAUUAAUCAAU
....(((((((((.....(((........))))))))........((((.((((....((((....))))(((......)))......)))).))))))))............. ( -26.30)
>DroSec_CAF1 3269 114 + 1
AACUCCCCGUGGGAUCAUCGGUCCCAUCCCCGCCCACAUUCAAUGGAAAUUUGAUACCUUGCGAUAGCAAAGCAUUUUAGCUAAACUUUCAACUUUUGGGGUCCAUUAAUCAAU
....(((((((((.....(((........))))))))........((((.((((....((((....))))(((......)))......)))).))))))))............. ( -26.30)
>DroEre_CAF1 3568 103 + 1
AAUACCCCGUGGGAUCAUCGGUCCCAUCCCCGCCCACAUUCAAUGGAAAUUUGAUACCUUG-----------CAUUUUAGCUAAACUUUCAACUUUUGGGGUCCAUUAAUCAAU
...((((((((((.....(((........))))))))........((((.((((......(-----------(......)).......)))).)))))))))............ ( -23.32)
>consensus
AACUCCCCGUGGGAUCAUCGGUCCCAUCCCCGCCCACAUUCAAUGGAAAUUUGAUACCUUGCGAUAGCAAAGCAUUUUAGCUAAACUUUCAACUUUUGGGGUCCAUUAAUCAAU
....(((((((((.....(((........))))))))......(((((.((((.((...(((.........)))...))..)))).)))))......))))............. (-21.18 = -21.27 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:21 2006