| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,266,666 – 17,266,762 |
| Length | 96 |
| Max. P | 0.868056 |
| Location | 17,266,666 – 17,266,762 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 75.96 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -8.23 |
| Energy contribution | -9.59 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.31 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.868056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17266666 96 - 20766785 --AAU-----GAAAUUAAGGCCCG-ACUACAAUGUUGCC-CC---------------ACUGACUAGAUAAUAUCGCAAUCAAAAUGCCAAAUGCAUUUUUUAUUGAGUUAGUCAGCGACC --...-----........((..((-((......))))..-))---------------.((((((((.........((((.(((((((.....)))))))..))))..))))))))..... ( -20.20) >DroPse_CAF1 23583 118 - 1 UAAGUCUCUGGACAUUAAGGUCGGAGCGACAAUGUUGCU-CCGGCGUGGACGGAUCUGCCAAGUAGAUAAUAACGCAAUCAAACUGCCAAAUGCAUUUUUUAUUGGGGCACACAGAUAC- ...((.((((((.......(((((((((((...))))))-)))))(((.....((((((...)))))).....)))..))....((((.((((.......))))..))))..)))).))- ( -36.10) >DroSec_CAF1 1737 95 - 1 --AAU-----GAAAUUAAGGCCCG-UCUACAAUGUUGCC-CC---------------ACUGACUAGAUAAUAUCGCAAUCAAAAUGCCAAAUGCAUUUUUUAUUGAGUUAGUCAGCGAC- --...-----........(((.((-(.....)))..)))-.(---------------.((((((((.........((((.(((((((.....)))))))..))))..)))))))).)..- ( -18.30) >DroEre_CAF1 1963 96 - 1 --AAU-----GAAAUUAAGGCCCG-GCAACAAUGUUGCCCCC---------------ACUGACUAGAUAAUAUCGCAAUCAAAAUGCCAAAUGCAUUUUUUAUUGAGUUAGUCAGCGAC- --...-----........((...(-(((((...)))))).))---------------.((((((((.........((((.(((((((.....)))))))..))))..))))))))....- ( -23.20) >DroPer_CAF1 23774 118 - 1 UAAAUCUCUGGACAUUAAAGUCGGAGCGACAAUGUUGCU-CCGGCGUGGACGGAUCUACCAAGUAGAUAAUAACGCAAUCAAACUGCCAAAUGCAUUUUUUAUUGGGGCACACAGAUAC- ......((((((.......(((((((((((...))))))-)))))(((.....((((((...)))))).....)))..))....((((.((((.......))))..))))..))))...- ( -35.80) >consensus __AAU_____GAAAUUAAGGCCCG_GCGACAAUGUUGCC_CC_______________ACUGACUAGAUAAUAUCGCAAUCAAAAUGCCAAAUGCAUUUUUUAUUGAGUUAGUCAGCGAC_ ..................(((....((......)).)))...................((((((((.......(.((((.(((((((.....)))))))..)))).)))))))))..... ( -8.23 = -9.59 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:20 2006