Locus 5330

Sequence ID 2R_DroMel_CAF1
Location 17,262,046 – 17,262,145
Length 99
Max. P 0.878184
window8513

overview

Window 3

Location 17,262,046 – 17,262,145
Length 99
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 88.70
Mean single sequence MFE -26.80
Consensus MFE -23.31
Energy contribution -24.10
Covariance contribution 0.79
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.87
SVM decision value 0.90
SVM RNA-class probability 0.878184
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17262046 99 + 20766785
GGAGAAAACUAGGGAGCUAUAGGCUCAAAUGCCAGCUGGUGGGCC-CUC-UGUCAGAGAUUAAGAUGAGCUUUAUU-UUAAGGCGCCAGCUGAAAAAAAAAG
.............((((.....))))......((((((((..(((-(((-.....))).(((((((((...)))))-))))))))))))))).......... ( -29.40)
>DroSec_CAF1 57854 99 + 1
GGAGAAAACUAGGGAGCUGUAGGCUCAAAUGCCAGCUGGUGGGCCUCUU-UGUCAGAGAUUAAGAUGAGCUUUAUU-UUAAGGCGCCAGCUGAAAA-AAAAG
.............((((.....))))......((((((((..(((((((-.....))))(((((((((...)))))-)))))))))))))))....-..... ( -28.80)
>DroSim_CAF1 55501 99 + 1
GGAGAAAACUAGGGAGCUGUAGGCUCAAAUGCCAGCUGGUGGGUCUCUC-UGUCAGAGAUUAAGAUGAGCUUUAUU-UUAAGGCGCCAGCUGAAAA-AAAAG
.............((((.....))))......((((((((.(((((((.-....))))))).......((((((..-.))))))))))))))....-..... ( -30.70)
>DroEre_CAF1 54810 84 + 1
GGAGAAAACUAGGG-------------AAUGCCAGCUGGUGGGCCUCUU-UGUCAGAGAUUAAGACGAGCUUUAUU-UUAAGGCGCCAGCAGAA---AGAAG
...........((.-------------....)).((((((........(-((((.........)))))((((((..-.))))))))))))....---..... ( -19.10)
>DroYak_CAF1 53977 99 + 1
GGAGAAAACUAGGGAGCUGUAGGCUCAAAUGCCAGCUGGUGGGCCUCUUCUGUCGGAGAUUAAGAUGAGCUUUAUUUUUAAGGCGCCAGCAGAA---AGAAG
.............((((.....))))........((((((.....(((((....))))).........((((((....))))))))))))....---..... ( -26.00)
>consensus
GGAGAAAACUAGGGAGCUGUAGGCUCAAAUGCCAGCUGGUGGGCCUCUU_UGUCAGAGAUUAAGAUGAGCUUUAUU_UUAAGGCGCCAGCUGAAAA_AAAAG
.............((((.....))))......((((((((....((((......))))..........((((((....)))))))))))))).......... (-23.31 = -24.10 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:14 2006