Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,261,881 – 17,261,979 |
Length | 98 |
Max. P | 0.684623 |
Location | 17,261,881 – 17,261,979 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.64 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -19.92 |
Energy contribution | -20.73 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.23 |
Mean z-score | -1.80 |
Structure conservation index | 0.73 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684623 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17261881 98 + 20766785 UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU .....((((((((((....)))---.((((((((....))))))))............)))))))......-.......((((((......))))))..... ( -28.00) >DroSec_CAF1 57691 98 + 1 UGUGCGGAAAAUUGCUGAAUCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU .....(((((((.(..(((..(---.((((((((....)))))))).).)))....).)))))))......-.......((((((......))))))..... ( -27.20) >DroSim_CAF1 55338 98 + 1 UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUUCCUUUCCAUUUUCCAUCUUC-UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU .....((((((((((....)))---.((((((((....))))))))............)))))))......-.......((((((......))))))..... ( -28.00) >DroEre_CAF1 54648 97 + 1 UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUCCUUUUACAUUUUCCAUCUUCCUU--UCUAAGCUGUAGCUUCGGCUUUUCUU .....((((((..((((((((.---.((((((((....))))))))((........))................--...........)))))))))))))). ( -27.90) >DroYak_CAF1 53814 98 + 1 UGUGCGGAAAAUUGCUGAAGCG---GUAGGCGCGCAGGUGUGCCUAGUUUCCUUUU-CAUUUUCCAUCUUCCUUUUUUUAAGCUGUAGCUUCGGCUUUUCUU .....((((((..(((((((((---(((((((((....))))))))....))....-..............(((.....))).....)))))))))))))). ( -27.70) >DroAna_CAF1 51961 81 + 1 UGUGCGGAAAAUUGCUGAAACGUUGGCAGGCGCGCAGGUGUGUCUUUUUUCUCG-AAGA--------CU-------CCUCGGCUGGA---UUGCCUUUUC-- ((((((.....((((..(....)..)))).))))))((...((((((......)-))))--------).-------))..(((....---..))).....-- ( -24.60) >consensus UGUGCGGAAAAUUGCUGAAGCG___GUAGGCGCGCAGGUGUGCCUAGUUUCCCUUUCCAUUUUCCAUCUUC_UCUUUUUAAGCCGUAGCUUCGGCUUUUCUU .....(((((((....(((((.....((((((((....))))))))))))).......)))))))..............((((((......))))))..... (-19.92 = -20.73 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:13 2006