| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,261,672 – 17,261,776 |
| Length | 104 |
| Max. P | 0.500000 |
| Location | 17,261,672 – 17,261,776 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.29 |
| Mean single sequence MFE | -31.59 |
| Consensus MFE | -17.41 |
| Energy contribution | -18.63 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17261672 104 - 20766785 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGAGACGGCAAUCUGAAC-----GA-ACUGAAACGGCAGGGAAACGAGUCG-----AGUGCCUU----- ..........(((((((((.(((...((((((.(((((....)))))....(((........))).)))-----))-)(((......))).....))).)))-----))))))..----- ( -34.40) >DroSec_CAF1 57479 102 - 1 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGAGACGGCAAUCUGAAC-----GA-AC--AAUCGGCAGGGAAACGAGUGG-----AGUGCCUU----- ..........(((((((....(((..((((((.(((((....)))))....(((........))).)))-----))-).--..)))((..(....)..)).)-----))))))..----- ( -30.30) >DroSim_CAF1 55126 102 - 1 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGAGACGGCAAUCUGAAC-----GA-AC--AAUCGGCAGGGAAACGAGUGG-----AGUGCCUU----- ..........(((((((....(((..((((((.(((((....)))))....(((........))).)))-----))-).--..)))((..(....)..)).)-----))))))..----- ( -30.30) >DroEre_CAF1 54439 100 - 1 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGACACGGC---------AAUCCGA-AC--AAUCGGCAGAGA-ACGAGUGGAGU--AGUGGCUU----- ...((((((((.....))))))))((.......(((((....))))).......(((...---------..((((.-..--..(((.......-.))).))))..--.)))))..----- ( -25.40) >DroYak_CAF1 53594 111 - 1 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGACACGGCAUUCUGAACAAUCUGA-AC--AAUCGACAGAAA-ACGAGGCGAGUGGAGUGCCUU----- ..........(((((((.(.....((((((((.(((((....)))))..............(((((..........-..--......))))))-)))))))...).)))))))..----- ( -35.47) >DroAna_CAF1 51728 110 - 1 AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCACCGGCUGCCAAAGAAAACG--AGCCUGACUAAAA-GAGAU--AGGUGGCUGGAUGCAGAAAGA-----GAUGCCAAGGAGG .......((((((((((.......(((.....))).((((((((..((..........--((.....))....-.....--.))..))))).))).....))-----).))))))).... ( -33.65) >consensus AUUUCAAUUUGGCGCUCGAAUUGAGCUUCGUUAGCGGCAAAGGCUGCAAAAAGAGACGGCAAUCUGAAC_____GA_AC__AAUCGGCAGGGAAACGAGUGG_____AGUGCCUU_____ ..........(((((((.....))))((((((.(((((....)))))...............((((.....................))))..))))))...........)))....... (-17.41 = -18.63 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:12 2006