Locus 5326

Sequence ID 2R_DroMel_CAF1
Location 17,255,272 – 17,255,366
Length 94
Max. P 0.873662
window8509

overview

Window 9

Location 17,255,272 – 17,255,366
Length 94
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 90.51
Mean single sequence MFE -29.93
Consensus MFE -24.80
Energy contribution -25.25
Covariance contribution 0.45
Combinations/Pair 1.12
Mean z-score -2.42
Structure conservation index 0.83
SVM decision value 0.88
SVM RNA-class probability 0.873662
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17255272 94 + 20766785
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCAUCGCUUUCCA-GGGGGCGUGGCUUAGCCAGAUAGCAA--AUCU--------CCCCA
...((.(((((.....)).((.(((((((....))))....(((((((.((........-)))))))))))).))...))).))..--....--------..... ( -27.00)
>DroSec_CAF1 50081 95 + 1
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCGCUUUCCAAGGGGGCGUGGCUUAGCCAGAUAGCAA--AUCU--------CCCCA
...((.(((((.....)).((.(((((((....))))....(((((((((..........)))))))))))).))...))).))..--....--------..... ( -29.70)
>DroSim_CAF1 48796 96 + 1
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCGCUUUCCA-GGGGGCGUGGCUUAGCCAGAUAGCAUCCAUCU--------CCCCA
...((.(((((.....)).((.(((((((....))))....((((((((..(.....).-.))))))))))).))...))).))........--------..... ( -30.10)
>DroEre_CAF1 48202 94 + 1
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCACUUUCCA-GGGGGCGUGGCGUAGCCAGAUAGAAA--AUCU--------CCCCA
..(((....(((((((((.......))))...)))))....(((((((((.........-)))))))))))).....((((.....--))))--------..... ( -27.40)
>DroYak_CAF1 47497 94 + 1
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCACUUUCCA-GGGGGCGUGGCUUAGCCAGAUAGCAA--AUCU--------CCCCA
...((.(((((.....)).((.(((((((....))))....(((((((((.........-)))))))))))).))...))).))..--....--------..... ( -29.80)
>DroAna_CAF1 45414 101 + 1
CUCCGAUUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCGCUUUCCA-GGGGGCGUGGU-CGGGCUGAUAGUAU--AUCUAAGCUGUCCCCCA
....(((..(((((((((.......))))...)))))....((((((((..(.....).-.))))))))))-)(((..((((((..--......)))))).))). ( -35.60)
>consensus
UUCGCAAUCGCAAUUUGCACUCAGCGCGAAAAAUUGCCACUCACGCCCCUCGCUUUCCA_GGGGGCGUGGCUUAGCCAGAUAGCAA__AUCU________CCCCA
.........((.(((((..((.(((((((....))))....(((((((((..........)))))))))))).)).))))).))..................... (-24.80 = -25.25 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:10 2006