Locus 5324

Sequence ID 2R_DroMel_CAF1
Location 17,245,472 – 17,245,586
Length 114
Max. P 0.624457
window8506

overview

Window 6

Location 17,245,472 – 17,245,586
Length 114
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 81.22
Mean single sequence MFE -32.12
Consensus MFE -17.14
Energy contribution -18.20
Covariance contribution 1.06
Combinations/Pair 1.10
Mean z-score -2.29
Structure conservation index 0.53
SVM decision value 0.19
SVM RNA-class probability 0.624457
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17245472 114 - 20766785
UAAAAACUAGCGCGAAAUUCACAUUUUU--CGCCCAUU--GUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGACUCUGGGUGCACUGAGCAAAUUUCGGUGCUAAGC
.......((((((((((((.........--...((...--.((((((((.....))))))))..)).(((((..((..(((((...)))))..)).))))).)))))).))))))... ( -35.30)
>DroSec_CAF1 49387 113 - 1
UAAAAACUAGCGCGAAAUUCGCAUUUUU--CGACCAUU--UUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGUCUCUGGAUGCACUGGAAAAAUUUU-GUGCUAAGU
.......((((((((((((.((((((..--.(((..((--(((((((((.....)))))))))))(((.((....)).))).)))...))))))..(....)))))))-))))))... ( -36.30)
>DroSim_CAF1 48106 113 - 1
UAAAAACUAGCGCGAAAUUCGCAUUUUU--CGCCCAUU--GUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGUCUCUGGAUGCACUGGGAAAAUUUU-GUGCUAACU
.......((((((((((((..(((((..--.((((...--.((((((((.....))))))))..)).))..)))))..(((((((.......).))))))..))))))-))))))... ( -35.50)
>DroEre_CAF1 47507 113 - 1
UAAAAACUAGCGCGAAAUUCGCAUUUUU--CGCCCAUU--GUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGACUGUGGCUGCACUGAGCAAAUUUU-GUCCCAAAC
.........((((((((........)))--)))(((..--..)))(((((((..((..(......(((.((....)).))).....)..))))))))).)).......-......... ( -28.50)
>DroYak_CAF1 46796 113 - 1
UAAAAACUAGCGCGAAAUUCGCAUUUUU--CGCCCAUU--GUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGACUCUGGGUGCACUGAGCAAAAUUG-AUUCUAGAC
......((((.((((((........)))--)))((...--.((((((((.....))))))))..)).(((((..((..(((((...)))))..)).))))).......-...)))).. ( -33.30)
>DroAna_CAF1 44708 101 - 1
CAAAAAGUAGCGAGAAUUUCACAUUUUUUUGGCCUUUUGUGUUGGCUGCCAAAAGCUUCCAAA--GAUCUCAAAU----UCAG--UGUGGCUGCUUUUGCAA-UUGUU-CU-------
..(((((((((........((((((..(((((..((((.((..((((......))))..))))--))..))))).----..))--)))))))))))))....-.....-..------- ( -23.80)
>consensus
UAAAAACUAGCGCGAAAUUCGCAUUUUU__CGCCCAUU__GUUGGUAGUGCAAAGCUGCCAAAAGGAGCUCAAAUGACCUCAGACUCUGGAUGCACUGAGAAAAUUUU_GUGCUAAAC
.........(((((.....)))...........(((.....((((((((.....))))))))...(((.((....)).)))......)))..))........................ (-17.14 = -18.20 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:08 2006