Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,824,585 – 2,824,705 |
Length | 120 |
Max. P | 0.813314 |
Location | 2,824,585 – 2,824,705 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.56 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -35.77 |
Energy contribution | -36.72 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.17 |
Mean z-score | -1.96 |
Structure conservation index | 0.85 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813314 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2824585 120 + 20766785 GCCCGUGAAGAAACAAAUCUGGAUUAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...........(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).)))))).(((.....)))...))).)).. ( -44.50) >DroPse_CAF1 11927 120 + 1 GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA ............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70) >DroSec_CAF1 13608 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUACAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..))........))..)..))).)).. ( -43.30) >DroSim_CAF1 26810 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA .(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).))))))........))..)..))).)).. ( -45.90) >DroYak_CAF1 13908 120 + 1 GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAAGUGUGGGCUACCGAGAAGCGGCAGGCGUGGAA (((((.........(((((((((((.........(....).(((......)))....)))))))))))(((((........))))).....)))))..(((....((.....)).))).. ( -40.70) >DroPer_CAF1 11105 120 + 1 GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA ............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70) >consensus GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA (((..............(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..)).(((.....)))..)))...... (-35.77 = -36.72 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:03 2006