Locus 532

Sequence ID 2R_DroMel_CAF1
Location 2,824,585 – 2,824,705
Length 120
Max. P 0.813314
window997

overview

Window 7

Location 2,824,585 – 2,824,705
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.56
Mean single sequence MFE -42.30
Consensus MFE -35.77
Energy contribution -36.72
Covariance contribution 0.95
Combinations/Pair 1.17
Mean z-score -1.96
Structure conservation index 0.85
SVM decision value 0.66
SVM RNA-class probability 0.813314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2824585 120 + 20766785
GCCCGUGAAGAAACAAAUCUGGAUUAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA
.(((((...........(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).)))))).(((.....)))...))).)).. ( -44.50)
>DroPse_CAF1 11927 120 + 1
GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA
............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70)
>DroSec_CAF1 13608 120 + 1
GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUACAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA
.(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..))........))..)..))).)).. ( -43.30)
>DroSim_CAF1 26810 120 + 1
GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGGUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA
.(((((...(..((...(((.((((.(((.....(....).))).)))).)))....((((((.(((((((((........))))))))).))))))........))..)..))).)).. ( -45.90)
>DroYak_CAF1 13908 120 + 1
GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAAGUGUGGGCUACCGAGAAGCGGCAGGCGUGGAA
(((((.........(((((((((((.........(....).(((......)))....)))))))))))(((((........))))).....)))))..(((....((.....)).))).. ( -40.70)
>DroPer_CAF1 11105 120 + 1
GACAGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGUGAGACUUGGAUCGAGGAGAAGGUGCAGAUCUGGCGCACCGAGAAGCGUCAGGUCUGGGCAACCGAGAAGCGGCAGGCGUGGAA
............((...(((.((((...(((...(....).))).)))).)))....(.((((((((((((((........)))))))))))((....)).....))).)..))...... ( -39.70)
>consensus
GCCCGUGAAGAAGCAGAUCUGGAUCAAGGAGAAGCGCGAGACCUGGAUCGAGGAGAAGGUUCAGAUCUGGCGCACCGAGAAGCGCCAGGUGUGGGCCACCGAGAAGCGGCAGGCGUGGAA
(((..............(((.((((.(((.....(....).))).)))).)))....((..((.(((((((((........))))))))).))..)).(((.....)))..)))...... (-35.77 = -36.72 +   0.95) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:03 2006