Locus 5319

Sequence ID 2R_DroMel_CAF1
Location 17,242,044 – 17,242,141
Length 97
Max. P 0.557710
window8497

overview

Window 7

Location 17,242,044 – 17,242,141
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 88.65
Mean single sequence MFE -26.48
Consensus MFE -19.00
Energy contribution -19.76
Covariance contribution 0.76
Combinations/Pair 1.17
Mean z-score -1.72
Structure conservation index 0.72
SVM decision value 0.05
SVM RNA-class probability 0.557710
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17242044 97 + 20766785
AAAGCCUUGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGAAGCACUCGAAGAAAAAGUUGUAUAACACUUAUGCGAUUUCCAUGAAAUUAUGCAAG
.....((((((...(((((((((....)))).....((....))...)))))...((((((((((.....))))))))))...........)))))) ( -26.40)
>DroSec_CAF1 41680 96 + 1
AAAGCCUUGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGAUGCACUCGAA-AAAAAGUUGCAUACCAUCUAUGCGAUUUGCAUGAAAAGAUGCAAU
...((....((((......((((....)))).....))))..)).......-...((((((((((.....))))))))))((((......))))... ( -27.60)
>DroSim_CAF1 44726 96 + 1
AAAGCCUUGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGAUGCACUCGAA-AAAAAGUUGCAUACCAUCUAUGCGAUUUGCAUGAAAAUAUGCAAU
...((....((((......((((....)))).....))))..)).......-...((((((((((.....))))))))))(((((....)))))... ( -27.50)
>DroEre_CAF1 43921 97 + 1
AAAGCCUCGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGAUGCACUCGAAGAAAAAGCUGCAUACCACUUUUCAGAUUUGCAUACAAUUAUGCAAG
........(((((.(((((((((....)))).....((....))...))))).....)))))................(((((((....))))))). ( -27.30)
>DroYak_CAF1 43099 96 + 1
AAAGCCUCGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGUUGCACUUGAAGAAAAAGUUGCAUACCACUCUUGAGAUUUGGUUAAAAUU-UGCAAG
........(((((......((((....)))).....)))))(((((((.......))).)))).......((((((((((.....)))))-).)))) ( -23.60)
>consensus
AAAGCCUUGCAGCCCUUUGGGCCUUUUGGCCAGCCAGCUGAUGCACUCGAAGAAAAAGUUGCAUACCACUUAUGCGAUUUGCAUGAAAUUAUGCAAG
........(((((.(((((((((....)))).....((....))...))))).....)))))................(((((((....))))))). (-19.00 = -19.76 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:59 2006