Locus 5317

Sequence ID 2R_DroMel_CAF1
Location 17,241,571 – 17,241,662
Length 91
Max. P 0.929461
window8492

overview

Window 2

Location 17,241,571 – 17,241,662
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -23.87
Consensus MFE -19.30
Energy contribution -19.54
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.91
Structure conservation index 0.81
SVM decision value 1.20
SVM RNA-class probability 0.929461
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17241571 91 - 20766785
CUCUUCAGUCGAGUGGCCUUCCAUUGGU-UUGCAUGUUAUCUGCUCCAUCAGCAGCAUCUCCCCAAUCAGUGAUGCACAUCUGGAUACUUUC
.......(((.((((((....(((((((-(..........(((((.....))))).........))))))))..)).)).)).)))...... ( -17.61)
>DroSec_CAF1 41193 92 - 1
CUCUUCAGUCGAGUGGCCUUCCAUUGGUUUUGCAUGUUAUCUGCUCCAUCAGCAGCAUCUCACCAAACCGUGAUGCCAACCUGGCUACUUUC
..........((((((((.......((((..(((......(((((.....)))))....((((......))))))).)))).)))))))).. ( -23.20)
>DroSim_CAF1 44247 92 - 1
CUCUUCAGUCGAGUGGCCUUCCAUUGGUUUUGCAUGUUAUCUGCUCCAUCAGCAGCAUCUCCUCAAUCAGUGAUGCCCAUCUGGCUACUUUC
..........((((((((......(((..............((((.....))))(((((.(........).))))))))...)))))))).. ( -22.00)
>DroEre_CAF1 43429 87 - 1
CUCUUCAGUCGAGUGGCCUUCCAUUGGU-UUGCAUGUUAUCUGCUCCAUCAGCAGCAUCUCCGCAGGCAGUGAUGC----CUGGCUACUUUC
..........((((((((..........-..((.......(((((.....))))).......))(((((....)))----)))))))))).. ( -26.74)
>DroYak_CAF1 42589 91 - 1
CUCUUCAGUCGAGUGGCCUUCCAUUGGU-UUGCAUGUUAUCUGCUCCAUCGGCCGCAUCUCCGCAAGCAGUGAUGCGCACUUGACUACUUUC
......((((((((((((......(((.-..(((.......))).)))..)))((((((..(....)....)))))))))))))))...... ( -29.80)
>consensus
CUCUUCAGUCGAGUGGCCUUCCAUUGGU_UUGCAUGUUAUCUGCUCCAUCAGCAGCAUCUCCCCAAGCAGUGAUGCCCACCUGGCUACUUUC
..........((((((((.....(((((...(((.......)))...)))))..(((((.(........).)))))......)))))))).. (-19.30 = -19.54 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:54 2006