Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,239,850 – 17,239,940 |
Length | 90 |
Max. P | 0.661897 |
Location | 17,239,850 – 17,239,940 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 94.95 |
Mean single sequence MFE | -17.80 |
Consensus MFE | -17.43 |
Energy contribution | -17.76 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.98 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17239850 90 + 20766785 AACCACAAAGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUA---GCUGGAUAACCAAACAGAAGCAACAGCCACACAUCUUAA ..........(((((..(((....((((.........(((.((.(((....---))).)).)))........))))....)))...))))).. ( -17.13) >DroSec_CAF1 39453 91 + 1 AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA--CAUCUUAA ..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))--.))))).. ( -18.13) >DroSim_CAF1 42555 91 + 1 AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA--CAUCUUAA ..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))--.))))).. ( -18.13) >consensus AACCACAACGAAGGUAAUGGAAAAUGCUGAAUCUCAAGUUCUCGAGCUGUACGAGCUGGAAAACCAAACAGAAGCAACAGCCA__CAUCUUAA ..........(((((..(((....((((.........(((.((.((((.....)))).)).)))........))))....)))...))))).. (-17.43 = -17.76 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:52 2006