Locus 531

Sequence ID 2R_DroMel_CAF1
Location 2,818,613 – 2,818,715
Length 102
Max. P 0.823857
window996

overview

Window 6

Location 2,818,613 – 2,818,715
Length 102
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 72.77
Mean single sequence MFE -38.27
Consensus MFE -23.69
Energy contribution -24.33
Covariance contribution 0.65
Combinations/Pair 1.41
Mean z-score -1.44
Structure conservation index 0.62
SVM decision value 0.69
SVM RNA-class probability 0.823857
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2818613 102 - 20766785
-----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGCUU----ACUGCUGGCCAUUGCCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCCG
-----..(((((.((((.((.....---)))))).))))).......((((----(((((..((....(....).....))..))))).)))).((((((.......)))))). ( -39.90)
>DroSec_CAF1 7725 102 - 1
-----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAGCUUCGCUU----ACUGCUGGCCAUUGCCUGCUCCAAGUCGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG
-----..(((((.((((.((.....---)))))).)))))((((...))))----.(((((.(((((((((.((.....)).))))))..))).)))))(((((.....))))) ( -40.00)
>DroSim_CAF1 7378 102 - 1
-----UCGGAGUCGGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGCUU----GCUGCUGGCCAUUGCCUGCUCCAAGUCGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG
-----..(((((.((((.((.....---)))))).))))).......((..----((((((.(((((((((.((.....)).))))))..))).)))))).))........... ( -41.00)
>DroYak_CAF1 7879 106 - 1
-----UCGGAGUCCGAGAUGCUGCC---CACUCCUGCUCCAAACUUCGGCUGCUGGCUAUUGGCUUUUGGCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG
-----..(((((..(((.((.....---)))))..)))))..((((.((((((..(((...(((........)))...)))..))))))))))..(((((.......))))).. ( -40.60)
>DroAna_CAF1 5991 97 - 1
------CGCUGCUGCCGAUGCUGCC---CACUCCUGUUGAAAACAUUGGUA-------GUUGGUAUUUGUUAGUUGGAAGUUGGCAGGCAGGUAGGCAGCUGUAC-CGCUGCAA
------.....(((((..(((((((---.(((((..(((((((.((..(..-------.)..)).))).))))..)).))).)))).))))))))(((((.....-.))))).. ( -31.10)
>DroPer_CAF1 5824 97 - 1
UGUUGCUGCUGCUGGAGUUGCUGCCAGCCGCUCCUGCACCAUGCUCCAUUC----CCCA-----UGUUGCAUGC----GAUUGGCAUCCA----GGCAGCUGCACCCGCUGCAU
...(((.(((((((((.....(((((..(((...((((.((((........----..))-----)).)))).))----)..)))))))))----.))))).))).......... ( -37.00)
>consensus
_____UCGGAGUCGGAGAUGCUGCC___CACUCCUGCUCCAAACUUCGCUU____ACUGCUGGCCAUUGCCUGCUCCAAGUUGGCAGUCAGGUAGGCAGCUGCACCCGCUGCAG
.......(((((.((((.((........)))))).)))))................(((((....((((((.((.....)).))))))..)))))(((((.......))))).. (-23.69 = -24.33 +   0.65) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:02 2006