| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,225,180 – 17,225,276 |
| Length | 96 |
| Max. P | 0.762881 |
| Location | 17,225,180 – 17,225,276 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.61 |
| Mean single sequence MFE | -40.12 |
| Consensus MFE | -18.12 |
| Energy contribution | -18.98 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17225180 96 - 20766785 GACCACAGGCAGUGCCAGCAAGCGCUCGCAGCUGAAUC------AACA------------GCAGCACAACAACCUGGAUGCCUCAAUGCUGGCGCACCGAGAGGGCACGCCCAU .......(((.(((((((((((.((((((.((((....------..))------------)).)).((......)))).))))...))))))))).((....))....)))... ( -36.20) >DroPse_CAF1 24882 102 - 1 AACCACGGGCAGUGCCAGCAAGCGUUCUCAGCUGAAUC------AGCA------GCAGCAGCAGCACAACAAUCUGGAUGCCUCGAUGCUGGCCCAGCGCGAGGGCACGCCAAU .......(((.(((((.....((((((...((((....------..))------)).((....))..........))))))((((.(((((...)))))))))))))))))... ( -38.80) >DroGri_CAF1 31532 105 - 1 UACCACGGGCAGCGCGAGCAAACGCUCGCAGCUGUUGC------AGCAGCA---GCAGCAUCUGCAGAACAAUCUGGAUGCCUCGAUGCUGGCCCAGCGUGAGGGCACGCCCAU ......((((.((((((((....)))))).((((((((------....)))---)))))....)).............(((((..((((((...))))))..))))).)))).. ( -51.60) >DroMoj_CAF1 36059 108 - 1 CACAACGGGCAGCGGCAGCAAACGUUCGCAGCUGAUGC------AACAGCAACUGCAGCAGCAGCAAAGCAAUUUGGAUGCCUCCAUGCUGUCCCAGCGCGAGGGCACGCCCAU ......((((.((.((.((........)).((((.(((------(........)))).)))).))...))........((((..(.(((((...))))).)..)))).)))).. ( -39.90) >DroAna_CAF1 23992 102 - 1 GACCACGGGCAGUGCCAGCAAGCGCUCGCAGCUGAAUCUCCAGCAGCA------------GCAGUACAACAAUCUGGACGCCUCCAUACUGUCCCAGCGCGAGGGCACACCCAU ......(((..(((((.....(((((.((.((((......)))).)).------------((((((........((((....))))))))))...)))))...))))).))).. ( -37.80) >DroPer_CAF1 24896 96 - 1 AACCACGGGCAGUGCCAGCAAGCGUUCUCAGCUGAACC------AGCA------------GCAGCACAACAAUCUGGAUGCCUCUAUGCUGGCCCAGCGCGAGGGCACGCCAAU .......(((.((((((((....)))(((.((((..((------((((------------(((...((......))..))).....))))))..))))..)))))))))))... ( -36.40) >consensus AACCACGGGCAGUGCCAGCAAGCGCUCGCAGCUGAAUC______AGCA____________GCAGCACAACAAUCUGGAUGCCUCCAUGCUGGCCCAGCGCGAGGGCACGCCCAU .....((.((.(.(((((((..........((((...........................))))..........((...))....))))))).).)).)).(((....))).. (-18.12 = -18.98 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:43 2006