| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,222,827 – 17,222,944 |
| Length | 117 |
| Max. P | 0.987054 |
| Location | 17,222,827 – 17,222,944 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 70.45 |
| Mean single sequence MFE | -23.88 |
| Consensus MFE | -12.28 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.51 |
| SVM decision value | 2.06 |
| SVM RNA-class probability | 0.987054 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17222827 117 - 20766785 AGUUUUUAACAGUCUACAGAACAGUCUGC-UAAACAUUACUGUACUUGCACCCUGAU-UACUUUUAAAUAACAUUUGUUUCUGCAAGUGUAACAGCUGUUAGGAACACAUCUCCCACUA .((((((((((((........(((..(((-...(((....)))....)))..)))..-............((((((((....))))))))....))))))))))))............. ( -28.30) >DroEre_CAF1 23047 92 - 1 -AUUUUUAACAGUCUACAGA---UUCUGC-UUAGCAUUACUGUAAUUGCACCCUGGUUUACUUUUAGAUA---------------------AAUGCUGCAAGAAGCACAUUUUCCAGU- -........((((.(((((.---(..(((-...)))..))))))))))....((((.............(---------------------((((.(((.....)))))))).)))).- ( -14.44) >DroYak_CAF1 23014 115 - 1 AGUUUUUAACAGUCUACAGG---GUCUGCCUUAGCAUUACUGUACUUGCACCCUGGUUCACUUUUAAUUAACAUUUGUUUCUGCAAGUGUAACAGCUGUAAAAAGCACACUUAACCAU- .((((((.(((((...((((---((..((....(((....)))....))))))))...............((((((((....))))))))....))))).))))))............- ( -28.90) >consensus AGUUUUUAACAGUCUACAGA___GUCUGC_UUAGCAUUACUGUACUUGCACCCUGGUUUACUUUUAAAUAACAUUUGUUUCUGCAAGUGUAACAGCUGUAAGAAGCACAUUUACCAAU_ .((((((.(((((...(((.......(((....(((....)))....)))..)))...............((((((((....))))))))....))))).))))))............. (-12.28 = -12.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:41 2006