Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,220,733 – 17,220,843 |
Length | 110 |
Max. P | 0.837716 |
Location | 17,220,733 – 17,220,843 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.11 |
Mean single sequence MFE | -29.33 |
Consensus MFE | -13.52 |
Energy contribution | -16.10 |
Covariance contribution | 2.58 |
Combinations/Pair | 1.19 |
Mean z-score | -3.53 |
Structure conservation index | 0.46 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17220733 110 + 20766785 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUUGUAUUCCGUUUUGCUCCCCGUCGCAGAGAGAGGGAGAG-AACUCUCUUACUCUCUCA ((((((((((.......)))........-...........((((..........))))....)))))))...........(((((((..((((-....))))..))))))). ( -30.30) >DroSec_CAF1 20653 110 + 1 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGUUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG-AACUCUCUUCCUCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))...........(((((((((((((-....))))))))))))). ( -35.93) >DroSim_CAF1 23073 110 + 1 GCAAAACGCAUUUUCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGUUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG-AACUCUCUUCCUCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))...........(((((((((((((-....))))))))))))). ( -35.93) >DroEre_CAF1 20983 104 + 1 GCAAAACGCAUU-UCCCUGCUUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGCUCGCCAUCACAGUGAGA------GACACUCUCUUUCGCUCUCA ((((((((((..-....)))..((((..-.....(((....)))..........))))....)))))))..........(((((((------((.....))))))))).... ( -23.53) >DroYak_CAF1 20897 111 + 1 GCAAAACGCAUUUUCCCUGCCUAGCGUU-UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGUUCGUCAUCGCAGUGAGAGAGAGAGAAACUCUCUUUCGCUCUCA ((((((((((.......)))..((((..-.....(((....)))..........))))....)))))))........(.((((((((((((.....)))))))))))))... ( -27.83) >DroAna_CAF1 20137 100 + 1 ----AUCGCAAU-U-CCAUCCAAGCGUUUUUAUUUGUUUUUACAUUCCAUUUAUCGCCCUCCCUCUUCCCACUCGGAGCAGCGA-----AGAG-AGCGCGCGCUCUCUCUCA ----.((((...-.-........(((........(((....)))..........))).((((............))))..))))-----((((-(((....))))))).... ( -22.47) >consensus GCAAAACGCAUUUUCCCUGCUUAGCGUU_UUAUUUGUUUUUACAUGCCAUUUAUCGCUUUCCGUUUUGCUCACCGUCGCAGAGAGAGGGAGAG_AACUCUCUUUCUCUCUCA ((((((((((.......)))...(((........(((....)))..........))).....)))))))..........((((.(((((((.....))))))).)))).... (-13.52 = -16.10 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006