Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,215,389 – 17,215,479 |
Length | 90 |
Max. P | 0.965059 |
Location | 17,215,389 – 17,215,479 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 87.18 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -22.30 |
Energy contribution | -22.46 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.84 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17215389 90 + 20766785 CACAGACAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUCCCGG----- ...............(((.((((((((((....)))))......((((....))))...........)))))))).((........))..----- ( -23.90) >DroSec_CAF1 15121 89 + 1 ------CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUGUCGGGAACA ------..((((((......((((...((((((..(((((((..((((....)))).)).)).)))..))))))))))....))))))(....). ( -29.50) >DroSim_CAF1 16715 89 + 1 ------CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUGUCGGGAAUA ------..((((((......((((...((((((..(((((((..((((....)))).)).)).)))..))))))))))....))))))....... ( -29.20) >DroEre_CAF1 15474 84 + 1 ---------ACAUCAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACUACCCAGGAA-- ---------..........((((((..((((((..(((((((..((((....)))).)).)).)))..)))))).((.....))..)))))).-- ( -26.50) >DroYak_CAF1 15605 84 + 1 ---------ACACUUACACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAACGCAGGAA-- ---------..........((((((((..((((..(((((((..((((....)))).)).)).)))..))))))).(.....)....))))).-- ( -24.30) >consensus ______CAGACAUGAGCACUCCUGGCAUAUCCUUGUGCAGACAAUCAGGAGACUGAAGUACUCGCAGCAGGAUGCAGGCAAACAUCCCGGGAA__ ...................((((((((..((((..(((((((..((((....)))).)).)).)))..))))))).(.....)....)))))... (-22.30 = -22.46 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:37 2006