Locus 5302

Sequence ID	2R_DroMel_CAF1
Location	17,209,662 – 17,209,777
Length	115
Max. P	0.603377

overview

Window 3

Location	17,209,662 – 17,209,777
Length	115
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	91.45
Mean single sequence MFE	-27.25
Consensus MFE	-20.36
Energy contribution	-21.68
Covariance contribution	1.31
Combinations/Pair	1.03
Mean z-score	-1.83
Structure conservation index	0.75
SVM decision value	0.14
SVM RNA-class probability	0.603377
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17209662 115 - 20766785
UAUGUGAGGUAGAUUCAUUUAACCACAAUUAUAUUGAGUUAGUCAGUGUUUUGCAGGGUGAAUGUGAAAAUGCUGAUUACAGCUUAUACGCGAUUGGCUUAAUAAUUUGUUAAUU
.......(((.((.....)).)))((((...(((((((((((((.((((((..((.......))..))...((((....))))....)))))))))))))))))..))))..... ( -27.50)
>DroSec_CAF1 9353 114 - 1
UAUGUGAGGUAGAUUGAUUUAACCACAAUUAUAUUGAGUUAGUCAGUGUUUUGCAGGGUGCAUGUGAAAAUGCUGAUUGCAGCUU-UAAGCGAUUGGCUUAAUAAUUUCUUAGUU
..((((.(.((((....)))).)))))....(((((((((((((.......(((((...((((......))))...)))))((..-...)))))))))))))))........... ( -29.20)
>DroSim_CAF1 9319 115 - 1
UAUGUGACGUAGAUUGAUUUAACCACAAUUAUAUUGAGUUAGUCAGUGUUUUGCAGGGUGAAUGUGAAAAUGCUGAUUGCAGCUUAUAAGCGAUUGGCUUAAUAAUUUGUUAGUU
..((((...((((....))))..))))....(((((((((((((....(((..((.......))..)))..((((....))))........)))))))))))))........... ( -25.10)
>DroYak_CAF1 9635 115 - 1
UAUGUGAGGUAGAUUGAUUUAACCACAAUAAUAUUGAGUUAGUCAGUGCAUUGAAGUGUGAAUGUGAAAACGCUGAUUACAGCUUAUAUGCGAUUGGCUAAUAAAUUUGGUAUUU
..((((.(.((((....)))).)))))..(((((..(((((((((((((((..((((((((..(((....)))...))))).)))..)))).))))))))))....)..))))). ( -27.20)
>consensus
UAUGUGAGGUAGAUUGAUUUAACCACAAUUAUAUUGAGUUAGUCAGUGUUUUGCAGGGUGAAUGUGAAAAUGCUGAUUACAGCUUAUAAGCGAUUGGCUUAAUAAUUUGUUAGUU
..((((...((((....))))..))))....((((((((((((((((((((((((.......))).)))))))).......((......)))))))))))))))........... (-20.36 = -21.68 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:36 2006