Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,209,026 – 17,209,122 |
Length | 96 |
Max. P | 0.976011 |
Location | 17,209,026 – 17,209,122 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 91.72 |
Mean single sequence MFE | -24.89 |
Consensus MFE | -21.76 |
Energy contribution | -21.62 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -2.30 |
Structure conservation index | 0.87 |
SVM decision value | 1.76 |
SVM RNA-class probability | 0.976011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17209026 96 + 20766785 UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAAAAA ........(((((((.(((.......(((((((((....))))))).))((.....)).....-...........--....))).).))))))...... ( -24.80) >DroSec_CAF1 8692 93 + 1 UAACAAAACUUUUGGCGCCAUUUUCAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAA--- ........(((((((.(((((((((.(((((((((....))))))).))((.....))..)))-)))..(.....--)...))).).))))))...--- ( -26.30) >DroSim_CAF1 8672 93 + 1 UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGGCACGCGGAAGAAA--- ........(((((((.(((.......(((((((((....))))))).))((.....)).....-...........--....))).).))))))...--- ( -24.80) >DroEre_CAF1 8915 93 + 1 UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACAA--GACAGUCACGCGGAAGAAC--- .........(((((((((........(((((((((....))))))).)).....)))))))))-...........--..........(....)...--- ( -23.62) >DroYak_CAF1 8966 95 + 1 UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA-AAUAACAACACGCGACAGGCACGCGGAAGAAC--- .........(((((((((........(((((((((....))))))).)).....)))))))))-..........((((.......)))).......--- ( -27.92) >DroAna_CAF1 9048 94 + 1 UGACAAAACUUUUGGCGCCAUUUUUAGUUUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAAAAAUAAAAACAA--AUCGCGCGCACGGCAUGGA--- .........(((((((((........(((((((((....))))))).)).....)))))))))............--.(((.((.....)).))).--- ( -21.92) >consensus UAACAAAACUUUUGGCGCCAUUUUUAGUCUGCACUCGAGAGUGCAGCACGCAAAGCGCUAGAA_AAUAACAACAA__GACAGGCACGCGGAAGAAA___ .........(((((((((........(((((((((....))))))).)).....))))))))).................................... (-21.76 = -21.62 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:35 2006