Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,818,479 – 2,818,573 |
Length | 94 |
Max. P | 0.972567 |
Location | 2,818,479 – 2,818,573 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -14.13 |
Energy contribution | -15.13 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.21 |
Mean z-score | -2.25 |
Structure conservation index | 0.66 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2818479 94 + 20766785 AUGUAACCCCCUGAAGUCUCCUGACCCUGGCACCAUUUACCAUCAUUUCCUGUUCGC-CCACACACUUAAUAACCAAGUCAGGGGUCAGGCGACA ...............(((.((((((((((((........................))-).....((((.......))))..))))))))).))). ( -24.26) >DroSec_CAF1 7591 94 + 1 AUGUAACCCCUUGGAGUCUCCUGACCCUGGCACCAUUUACCCUCAUUUCCUGUUCCC-CCACACACUUAAUAACCAAUUCAGAGGUCAGGUGACA ......((....)).(((.(((((((((((...........................-....................)))).))))))).))). ( -19.53) >DroSim_CAF1 7246 92 + 1 A--UAACCCCUUCGAGUCUCCUGACCCUGGCACCAUUUACCCUCAUUUCCUGUUCCC-CCACACACUUAAUAACGAAGUCAGGGGUCAGGUGACA .--............(((.((((((((((((...................(((....-..)))..(........)..)))).)))))))).))). ( -23.70) >DroEre_CAF1 7335 94 + 1 AUGUA-GCCCCUAAAGUCCCCUGACCCUGGCACCAGCUACCCUCGAUGCCUGUUCCCUCCAGACACUUUAUAGCCAAACCGGGGGUCAGGAGUCA .....-.........(.(.(((((((((.(.....((((.......((.(((.......))).)).....)))).....).))))))))).).). ( -24.30) >DroYak_CAF1 7763 79 + 1 AUGUAAGCCCUUGAAGUCUCUUGAC----------------CUCAUUCCCUGUUCCCUCCACACACUUGAUAACCAAAUGAGAAGUCAGGAGUCA ...............(.((((((((----------------((((((....(((..(...........)..)))..))))))..)))))))).). ( -15.60) >consensus AUGUAACCCCUUGAAGUCUCCUGACCCUGGCACCAUUUACCCUCAUUUCCUGUUCCC_CCACACACUUAAUAACCAAAUCAGGGGUCAGGAGACA ...............(((.(((((((((((................................................)))).))))))).))). (-14.13 = -15.13 + 1.00)
Location | 2,818,479 – 2,818,573 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 78.14 |
Mean single sequence MFE | -29.72 |
Consensus MFE | -15.42 |
Energy contribution | -16.70 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.84 |
Structure conservation index | 0.52 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2818479 94 - 20766785 UGUCGCCUGACCCCUGACUUGGUUAUUAAGUGUGUGG-GCGAACAGGAAAUGAUGGUAAAUGGUGCCAGGGUCAGGAGACUUCAGGGGGUUACAU .(((.(((((((((((..(((.((((.......))))-.))).))).......(((((.....))))))))))))).)))............... ( -29.50) >DroSec_CAF1 7591 94 - 1 UGUCACCUGACCUCUGAAUUGGUUAUUAAGUGUGUGG-GGGAACAGGAAAUGAGGGUAAAUGGUGCCAGGGUCAGGAGACUCCAAGGGGUUACAU .....(((((((.(((.(((..(((((...(.(((..-....))).).......)))))..)))..)))))))))).(((((....))))).... ( -25.40) >DroSim_CAF1 7246 92 - 1 UGUCACCUGACCCCUGACUUCGUUAUUAAGUGUGUGG-GGGAACAGGAAAUGAGGGUAAAUGGUGCCAGGGUCAGGAGACUCGAAGGGGUUA--U .....(((((((((((..(((.((((.......))))-.))).)))........((((.....)))).)))))))).(((((....))))).--. ( -30.40) >DroEre_CAF1 7335 94 - 1 UGACUCCUGACCCCCGGUUUGGCUAUAAAGUGUCUGGAGGGAACAGGCAUCGAGGGUAGCUGGUGCCAGGGUCAGGGGACUUUAGGGGC-UACAU ...((((((((((..((((..(((((...(((((((.......))))))).....)))))..).))).))))))))))...........-..... ( -41.00) >DroYak_CAF1 7763 79 - 1 UGACUCCUGACUUCUCAUUUGGUUAUCAAGUGUGUGGAGGGAACAGGGAAUGAG----------------GUCAAGAGACUUCAAGGGCUUACAU ....(((((.(((((((((((.....))))))...)))))...)))))..((((----------------(((....)))))))........... ( -22.30) >consensus UGUCACCUGACCCCUGACUUGGUUAUUAAGUGUGUGG_GGGAACAGGAAAUGAGGGUAAAUGGUGCCAGGGUCAGGAGACUUCAAGGGGUUACAU .(((.((((((((.................(.(((.......))).).......((((.....)))).)))))))).)))............... (-15.42 = -16.70 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:01 2006