Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,308,416 – 1,308,536 |
Length | 120 |
Max. P | 0.604993 |
Location | 1,308,416 – 1,308,536 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.92 |
Mean single sequence MFE | -39.35 |
Consensus MFE | -33.14 |
Energy contribution | -34.70 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.56 |
Structure conservation index | 0.84 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.604993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1308416 120 + 20766785 CCCAUGUGAUUGCGAUUGUGCGAAUGUGCGGUGGGGGUCCUCUUCGGCACACCCGCACACAAAUAAGAGCAACAAGAGCAUUUAGCGUCACUUUGGUGGCAAAAAUGGCUUGACCCAAAU ....(((..(((....((((((..(((((.(.(((....)))..).)))))..))))))....)))..))).((((..(((((...(((((....)))))..))))).))))........ ( -36.80) >DroSec_CAF1 26822 120 + 1 CCCAUGUGAUUGUGAUUGUGCGAGUGUGCGGUGAGGGUGCUCUUCGGCACACCCGCACACAAAUAAGAGCAACAAGAGCGUUUAGCGUCACUUUGGUGGCAAAAAUGGCUUGACCCAAAU ....(((..((((...((((((.((((((.(.(((....)))..).)))))).))))))...))))..))).((((..(((((...(((((....)))))..))))).))))........ ( -42.10) >DroSim_CAF1 5816 120 + 1 CCCAUGUGAUUGUGAUUGUGCGAGUGUGCGGUGAGGGUGCUCUUCGGCACACCCGCACACAAAUAAGAGCAACAAGAGCGUUUAGCGUCACUUUGGUGGCAAAAAUGGCUUGACCCAAAU ....(((..((((...((((((.((((((.(.(((....)))..).)))))).))))))...))))..))).((((..(((((...(((((....)))))..))))).))))........ ( -42.10) >DroEre_CAF1 9653 114 + 1 CCCACGUGA------UUGUGCGAAUGUGCGGCGGUGGUCCUUUUGGGCACACCCGCACACAAAUAAGAGCAACAAGAGCAUUUAGCGUCACUUUGGUGGCAAAAAUGGCUUGACCCAAAU .....((..------((((.....(((((((..(((.(((....))))))..)))))))...))))..))..((((..(((((...(((((....)))))..))))).))))........ ( -36.40) >consensus CCCAUGUGAUUGUGAUUGUGCGAAUGUGCGGUGAGGGUCCUCUUCGGCACACCCGCACACAAAUAAGAGCAACAAGAGCAUUUAGCGUCACUUUGGUGGCAAAAAUGGCUUGACCCAAAU .....((..((((...((((((.((((((.(.(((....)))..).)))))).))))))...))))..))..((((..(((((...(((((....)))))..))))).))))........ (-33.14 = -34.70 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:57 2006