Locus 5298

Sequence ID 2R_DroMel_CAF1
Location 17,199,591 – 17,199,688
Length 97
Max. P 0.964851
window8469

overview

Window 9

Location 17,199,591 – 17,199,688
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.22
Mean single sequence MFE -32.67
Consensus MFE -20.16
Energy contribution -20.17
Covariance contribution 0.00
Combinations/Pair 1.38
Mean z-score -2.02
Structure conservation index 0.62
SVM decision value 1.57
SVM RNA-class probability 0.964851
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17199591 97 - 20766785
------GUGGAACUUAAAGGGUAGGCGCUCGUCGGAGAGCUCUCGGAUUAACUGGGCUAACUUAAUGGUGGCCACACUUCCGGUGGCCGCUAUCAUCACAUUA
------((((........((((.(((.(..(((.(((....))).))).....).))).)))).(((((((((((.......)))))))))))..)))).... ( -34.60)
>DroVir_CAF1 885 103 - 1
ACUCACGUUAAAUUUAUAGGGCAGCUUUUCGUUGCUUAGUUCGGAUAUUAAUUGUACCAGUUUAAUGGUGGCCACGCUGCCUGUGGCCGCAAUGAGAACAUUG
.(((((((((((((....(((((((.....))))))).....(((((.....))).)))))))))))(((((((((.....)))))))))..))))....... ( -35.00)
>DroPse_CAF1 386 97 - 1
------GUGAAAUUUGUACGGCAGCCGUUCAUCGGAGAGUUCUGCUAUCAUUUGCGUUAACUUAAUGGUUGCCACGCUACCUGUGGCUGCUAUAAUCACAUUA
------((((.....(((.((((((((((.......(((((.(((........)))..)))))))))))))))..((((....))))))).....)))).... ( -28.11)
>DroSim_CAF1 315 97 - 1
------GUGGAACUUGAAGGGCAGGCGCUCGUCGGAGAGCUCCCGGAUUAACUGGGUUAACUUAAUGGUGGCCACACUGCCGGUGGCCGCUAUCAUCACAUUA
------((((....(((.((((....)))).)))(((....(((((.....)))))....))).(((((((((((.......)))))))))))..)))).... ( -35.00)
>DroAna_CAF1 738 97 - 1
------GUGGAUUUUAAAGGGCAGGCUUUCGUCGGAGAGCUCCUUGAUUAAUUGGGACAUUUUGAUGGUGGCCACACUGCCCGUGGCCGCCAGGAUCACAUUA
------(((((((....((((..(((((((....)))))))))))....))))............((((((((((.......))))))))))....))).... ( -35.20)
>DroPer_CAF1 384 97 - 1
------GUGAAAUUUGUACGGCAGCCGUUCAUCGGAGAGUUCUGCUAUCAUUUGCGUUAACUUAAUGGUUGCCACGCUACCUGUGGCUGCUAUAAUCACAUUA
------((((.....(((.((((((((((.......(((((.(((........)))..)))))))))))))))..((((....))))))).....)))).... ( -28.11)
>consensus
______GUGAAAUUUAAAGGGCAGCCGUUCGUCGGAGAGCUCUGCGAUUAAUUGGGUUAACUUAAUGGUGGCCACACUGCCUGUGGCCGCUAUAAUCACAUUA
......((((........(((.((.(.(((....))).))))))....................(((((((((((.......)))))))))))..)))).... (-20.16 = -20.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:32 2006