Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,196,481 – 17,196,577 |
Length | 96 |
Max. P | 0.584773 |
Location | 17,196,481 – 17,196,577 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.76 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -14.29 |
Energy contribution | -15.09 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.09 |
Mean z-score | -1.76 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584773 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17196481 96 + 20766785 GUUCGAAACUACAAAAGACAAGGCCUGAAAACUAAGCUACUAGCGCCAAAAACAGAGUAGGUUUUCCAAAGAGUGUGAAAUAGUUUGGAACCCAAG ((((.((((((....(.((..((((((.............))).)))............((....)).....)).)....)))))).))))..... ( -18.02) >DroSec_CAF1 12286 93 + 1 GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAGCAGAGUAGGUAUUCAGAUAAUUGUGAGAUAGUUUGGAACCC--- ((((.((((((.....(((((...(((((.(((..(((.((.((.......))))))).))).)))))....)))))...)))))).))))..--- ( -23.10) >DroSim_CAF1 12463 93 + 1 GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAGCAGAGUAGGUAUUCAGAUAAUUGUGAGAUAGUUUGUAACCC--- (((..((((((.....(((((...(((((.(((..(((.((.((.......))))))).))).)))))....)))))...))))))..)))..--- ( -17.30) >DroEre_CAF1 12559 94 + 1 GUUCGAAACUACAAAAUUCGAGCCCUGAAAACAAAGCUACUAGCACCAAAAACAUAGUAGGUUUUCAGAAGA--GUGAAAUAGUUUGGAAUCCAGG ((((.((((((....((((.....((((((((....((((((............))))))))))))))..))--))....)))))).))))..... ( -23.20) >DroYak_CAF1 12760 94 + 1 GUUCGAAACUACAAAACUUGAGUCCUGAGAACAAAGCUACUAGCACCAAAAACAUAGUAGGUUUUCAGAAGA--GUGAAAUUGUUUGGAAUCCAAG ((((.((((......((((...((.(((((((....((((((............))))))))))))))).))--))......)))).))))..... ( -21.40) >consensus GUUCGAAACUACAAAAUACGAGUCCUGAAAACUAAGCUACUAGCGCCAAAAACAGAGUAGGUUUUCAGAAGA_UGUGAAAUAGUUUGGAACCCA_G ((((.((((((.............((((((((....(((((..............)))))))))))))............)))))).))))..... (-14.29 = -15.09 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:29 2006