Locus 5295

Sequence ID 2R_DroMel_CAF1
Location 17,187,620 – 17,187,712
Length 92
Max. P 0.995804
window8465

overview

Window 5

Location 17,187,620 – 17,187,712
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 90.33
Mean single sequence MFE -25.16
Consensus MFE -20.94
Energy contribution -21.18
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -2.50
Structure conservation index 0.83
SVM decision value 2.62
SVM RNA-class probability 0.995804
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17187620 92 + 20766785
UUUCCACAAAGGAUGCAAAAGUGGAGAAGGGAAAGGAGACUGGGAAGUCUGUGGCCUCCAAGAGCAAUGGUAAAGAAACCGAGUCUUCAGUA
(((((((.............))))))).......(((((((.((...(((...(((............)))..)))..)).))))))).... ( -26.92)
>DroSec_CAF1 3520 92 + 1
CUUCUACAAAGGAUGCAAAAGUAGAGAAGGGAAAGGAGACUGGGAAGUCUGUGGCCGCCAAGAGCAAUGGUAAAGAAACCGAGUCUUCAAUA
.((((((.............))))))........(((((((.((...(((...(((((.....))...)))..)))..)).))))))).... ( -24.02)
>DroSim_CAF1 3521 92 + 1
CUUCCACAAAGGAUGCAAAAGUGGAGAAGGGAAAGGAGACUGGGAAGUCUGGGGUCGCCAAGAGCAAUGGAAAGGACACCGAGUCUUCAGUA
.((((((.............))))))........(((((((.((..((((.......(((.......)))...)))).)).))))))).... ( -24.72)
>DroEre_CAF1 3566 92 + 1
CUUCCACCAAGGAUGCAAAAGUGGAGAAGGGAAAGGAGACUGGGAAGACUGUGGCUGCCAAAAACAAUGGUAAAGAAACCGAGUCUUCAGUG
.((((((.............)))))).......((....))..(((((((.(((.(((((.......)))))......)))))))))).... ( -21.52)
>DroYak_CAF1 3566 92 + 1
UUUCCACCAAGGAUGCAAAGGUGGAGAAGGGAAAGGAGACUGGGAAGACUGUGACUGCCAAAAACAAUGGCAAAGAAACCGAGUCUUCAGUG
((((((((...........)))))))).......(((((((.((....((.....(((((.......))))).))...)).))))))).... ( -28.60)
>consensus
CUUCCACAAAGGAUGCAAAAGUGGAGAAGGGAAAGGAGACUGGGAAGUCUGUGGCCGCCAAGAGCAAUGGUAAAGAAACCGAGUCUUCAGUA
.((((((.............))))))........(((((((.((...(((......((((.......))))..)))..)).))))))).... (-20.94 = -21.18 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:28 2006