Locus 5294

Sequence ID	2R_DroMel_CAF1
Location	17,184,172 – 17,184,267
Length	95
Max. P	0.736559

overview

Window 4

Location	17,184,172 – 17,184,267
Length	95
Sequences	4
Columns	116
Reading direction	reverse
Mean pairwise identity	81.52
Mean single sequence MFE	-41.18
Consensus MFE	-24.31
Energy contribution	-24.00
Covariance contribution	-0.31
Combinations/Pair	1.21
Mean z-score	-2.12
Structure conservation index	0.59
SVM decision value	0.44
SVM RNA-class probability	0.736559
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17184172 95 - 20766785
GGACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUAUGUUCAGAUUCGGUGUC------AGAUUCGGGUUCGGU---------------GGCGGCGUCU
((((..(((.(((.((((((((((((.((..(((((((((((((......)))))....))))))))..)------))))))))))))).)---------------)).))))))) ( -41.10)
>DroSec_CAF1 77 95 - 1
CGACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUACGUUAAGAUUCGGUGUC------GGAUUAGGGAUCGGU---------------GGCGACGGCU
((..(((((.((....(((((.((((.((..(((((((((((((......)))))....))))))))..)------)))))..))))))).---------------)))))))... ( -31.80)
>DroSim_CAF1 77 95 - 1
GGACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGCACGUUCAGAUUCGGUGUC------GGAUUCGGGUUUGUU---------------GGCGGCGGCU
....(((((.((((..((((((((((.((..((((((((......(((((....)))))))))))))..)------)))))))))))..))---------------)).))))).. ( -40.70)
>DroYak_CAF1 77 116 - 1
GGACUCGCCACCUGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACCUAGGUUCAGAUUUGCUGUCGCAUUCGGAUUCGGGAUCGGUAGCGGUGGCGGUGGCGGUGGCGGCU
....(((((((((.((((((((((((..(((((.......)))))..)))))))))))).)...((..((((..(((...(((....)))...)))..))))..)))))))))).. ( -51.10)
>consensus
GGACUCGCCUCCAGUGGAUCUGGGUCGUGGUAUUGGGUUCGUACUUGGACGUACGUUCAGAUUCGGUGUC______GGAUUCGGGAUCGGU_______________GGCGGCGGCU
....(((((..((.((((((((((.((((((.(..(((....)))..))).)))))))))))))).)).........((.......))..................)))))..... (-24.31 = -24.00 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:27 2006