Locus 5291

Sequence ID 2R_DroMel_CAF1
Location 17,180,544 – 17,180,634
Length 90
Max. P 0.839233
window8460

overview

Window 0

Location 17,180,544 – 17,180,634
Length 90
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -30.90
Consensus MFE -18.87
Energy contribution -19.55
Covariance contribution 0.68
Combinations/Pair 1.35
Mean z-score -2.11
Structure conservation index 0.61
SVM decision value 0.74
SVM RNA-class probability 0.839233
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17180544 90 - 20766785
CUUCGAUUAGCCGAGCCCAAACUCUUUGGCGGAUUCACUUGAUCUGGUUG--------AGAGAGCGCAGCAAUCU--AAUCUCGACUUUGGGCUUGGCUA
.......((((((((((((((........((((((.....))))))((((--------(((..............--..))))))))))))))))))))) ( -35.29)
>DroSec_CAF1 5364 90 - 1
CUUCGAUUAGCCCAGCCCAAGUUCUUCAGCGGAUUCACGUGAUCUGGCUG--------AGAGAGCGCAGCAAUCU--AAUCUCGGCUUUGGGCUUGGCUA
.......(((((.((((((((((((((((((((((.....))))).))))--------).)))))..(((.....--.......)))))))))).))))) ( -35.30)
>DroSim_CAF1 5358 90 - 1
CUUCGAUUAGCCCAGCCCAAGUUCUUCAGCGGAUUCACGUGAUCUGGCUG--------AGAGAGCGCAGCAAUCU--AAUCCGGACUUUGGGCUUGGCUA
.......(((((.((((((((((((((((((((((.....))))).))))--------).))))).......(((--.....)))..))))))).))))) ( -34.70)
>DroEre_CAF1 5407 89 - 1
CUUCGAUUAGGCCAGCUGAAUUUCUUCAGGGGAUUCACUUGAUCCCGCUA--------AGAGAGCGCACCAAUCC--AAUCUCGACC-UGGGCUUGGCUC
.........((((((((....(((((.((((((((.....)))))).)))--------)))))))((.(((.((.--......))..-))))).))))). ( -24.40)
>DroYak_CAF1 5178 98 - 1
CUUCGAUUAGACCAGCCAAAGUUCUUCAGGGGAUUCACUUGAUUCGGCUAGAUCCAAGAGAGAGAGAUCC-AUCCUAAAUCUCCACC-UGGGCUUGGCUC
.............((((((.((((....(((((((..((((..((.....))..))))..((.((.....-.)))).)))))))...-.)))))))))). ( -24.80)
>consensus
CUUCGAUUAGCCCAGCCCAAGUUCUUCAGCGGAUUCACUUGAUCUGGCUG________AGAGAGCGCAGCAAUCU__AAUCUCGACUUUGGGCUUGGCUA
........((((.((((((((.((...((((((((.....)))))).))..........((((................)))))).)))))))).)))). (-18.87 = -19.55 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:23 2006