| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,815,233 – 2,815,349 |
| Length | 116 |
| Max. P | 0.513279 |
| Location | 2,815,233 – 2,815,349 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 67.36 |
| Mean single sequence MFE | -34.82 |
| Consensus MFE | -14.58 |
| Energy contribution | -17.80 |
| Covariance contribution | 3.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.42 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513279 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2815233 116 - 20766785 CGAUUAGAUAGACGCCGUUUGGCAGGAGCCCCUCUAAAAGGCAUGCGACACAAA-AAGUGGGCGUGGCAAAUCGGGGAAUACUGCCUUGGUUGGCCUGCCUUUAAA--UGCACUUUAUG .......(((((.(((.(((((.(((....)))))))).))).((((.(((...-..)))((((.(((.((((((((.......)))))))).)))))))......--)))).))))). ( -37.70) >DroSec_CAF1 4636 116 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUAAAAGGCAUGCGACACAAA-AAGUGGGCGUGGCAAAUCGGGGCAUACUGCCUUGGUUGGGCUGCCUCUAAA--UGCUCUUUAUG ..................................((((..((((((..(((...-..))).))(..((.(((((((((.....)))))))))..))..)......)--)))..)))).. ( -29.40) >DroSim_CAF1 4199 116 - 1 CGAUUCGGCAGACGCCGUUUGCCAGGAGCCCCUCUAAAAGGCAUGCGACACAAA-AAGUGGGCGUGGCAAAUCGGGGAAUACUGCCUUGGUUGGGCUGCCUCUAAA--UGCACUUUAUG ......(((((((...)))))))((((((((........(.(((((..(((...-..))).))))).).((((((((.......))))))))))))).))).....--........... ( -40.10) >DroEre_CAF1 4370 101 - 1 CAAUUGGCCAAACGCAGUUUGGCAGGAGCCCCCCUAAAAGGCAUGCGACACAAA-AUGUGGGCGUGUCAAAUCGG---------------UUGGCCUGCCCUUGAAGUUGCACCUUU-- ......(((((((...)))))))(((.(((.........))).((((((((...-..))(((((.(((((.....---------------))))).))))).....)))))))))..-- ( -34.40) >DroYak_CAF1 4808 97 - 1 CAAUUGGGCAGACGCCGUUUGGCAGGAGCUUCUCUAAAAGGCAUGUGACACAAAAAGGUGGGCGUGUCAAAUCGGGGA------------UUGGUUUGCUUUGG---UUGAA------- ((((..((((((((((....))).......(((((....(((((((..(((......))).))))))).....)))))------------...)))))).)..)---)))..------- ( -32.50) >consensus CAAUUGGGCAGACGCCGUUUGGCAGGAGCCCCUCUAAAAGGCAUGCGACACAAA_AAGUGGGCGUGGCAAAUCGGGGAAUACUGCCUUGGUUGGCCUGCCUUUAAA__UGCACUUUAUG ....................((((((.............(.(((((..(((......))).))))).).((((((((.......))))))))..))))))................... (-14.58 = -17.80 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:59 2006