Locus 5286

Sequence ID 2R_DroMel_CAF1
Location 17,173,510 – 17,173,628
Length 118
Max. P 0.848351
window8448

overview

Window 8

Location 17,173,510 – 17,173,628
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 82.80
Mean single sequence MFE -20.25
Consensus MFE -17.83
Energy contribution -16.84
Covariance contribution -0.99
Combinations/Pair 1.22
Mean z-score -1.59
Structure conservation index 0.88
SVM decision value 0.78
SVM RNA-class probability 0.848351
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17173510 118 - 20766785
GCUUGACUCCACUUUUCCGGAAAUAUUAGGCACACGUGUUUGACAAGUUUUAGAAGUACUCGAACUUUUUUCUUGAACUUCCUUUUCUAUUAGUAUUAGUACACUCUAUUAGUAUUUU
(((((..(((........)))....(((((((....))))))))))))....(((((.(..(((.....)))..).)))))..........((((((((((.....)))))))))).. ( -19.60)
>DroSec_CAF1 40550 107 - 1
GCUUGACUCCACUUUUCCGGAAAUGUUAAGCACACGUGCUUGGCAAGUUUUACAAUUACUCGAACUUUUUUGUUGAACUUCCUUUUCCAUA-----------GCUCUAUUAGUAUUUU
(((((....)).......((((((((((((((....)))))))))(((((.((((..............)))).)))))....)))))..)-----------)).............. ( -20.54)
>DroSim_CAF1 41479 104 - 1
GCUUGACUCCACUUUUCCGGAAAUGUUAAGCACAUGUGCUUGACAAGUUUUACAACUAU---GACUUCUUUGUUGAACUUCCUUUUCCAUA-----------GCUUUAUUAGUAUUUU
..................((((((((((((((....)))))))))(((((.((((....---.......)))).)))))....)))))...-----------(((.....)))..... ( -20.60)
>consensus
GCUUGACUCCACUUUUCCGGAAAUGUUAAGCACACGUGCUUGACAAGUUUUACAACUACUCGAACUUUUUUGUUGAACUUCCUUUUCCAUA___________GCUCUAUUAGUAUUUU
..................((((((((((((((....)))))))))(((((.((((..............)))).)))))....))))).............................. (-17.83 = -16.84 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:12 2006