Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,168,528 – 17,168,626 |
Length | 98 |
Max. P | 0.568409 |
Location | 17,168,528 – 17,168,626 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.53 |
Mean single sequence MFE | -18.62 |
Consensus MFE | -12.10 |
Energy contribution | -12.72 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.24 |
Mean z-score | -1.57 |
Structure conservation index | 0.65 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17168528 98 - 20766785 GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUACAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC (((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60) >DroSec_CAF1 35699 98 - 1 GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUAAAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC (((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60) >DroSim_CAF1 36723 98 - 1 GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA-AUAAAACUAUAUGUCUAAAUAUAUAUG------UUUGCUGCGUUUUUC (((((((..(((((..........(((((((...)))))))...............-.......(((((((....)))))))))------))))))))))..... ( -19.60) >DroEre_CAF1 36682 98 - 1 GCGCAGUGUGAACAAAGCUUAAACUUCAUUCCGCGAAUGAAUAAUCUGAUUAAAAA-AUAAAAGUAUUUGUCUAUACAGAUAUU------UUUGGUGCGCUUUUC ((((((((.(((..(((......)))..))))))......................-.(((((((((((((....)))))))))------)))).)))))..... ( -22.90) >DroYak_CAF1 36223 98 - 1 GCGCAGUGUGAACAAAGCCUGAACUUCAUUCCGCGAAUGAAUAAUCUGAUUAAAAA-AUAAAAGUAUUUGUAUAAAUAGUUAUU------GUUGCUGCGUUUUUC (((((((...(((((.........(((((((...)))))))(((.(((.(((..((-(((....)))))...))).))))))))------))))))))))..... ( -17.70) >DroPer_CAF1 53039 99 - 1 CCCCAUAAUGAAAAAAGAUUGUGCUUCAUUCCAAGAAUGAAUAAUCUGAUUAAAUAAACCACAAUAUU------AAUAUACAAGAAAUCAUUAUACGAGUUCCUC ....(((((((....(((((((...((((((...))))))))))))).....((((........))))------.............)))))))........... ( -12.30) >consensus GCGCAGUGUGAACAAAGCCUAAACUUCAUUCCGAGAAUGAAUAAUCUGAUUAAAAA_AUAAAACUAUAUGUCUAAAUAUAUAUG______UUUGCUGCGUUUUUC (((((((.................(((((((...))))))).......................(((((((....)))))))...........)))))))..... (-12.10 = -12.72 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:10 2006