| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,161,991 – 17,162,103 |
| Length | 112 |
| Max. P | 0.714104 |
| Location | 17,161,991 – 17,162,103 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.30 |
| Mean single sequence MFE | -20.98 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.714104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17161991 112 + 20766785 CCAAAGAAAUUUUUGAAAACUCUGCUCACAUGAUCAAAGAAGUUAUCAAGUUAUCAAAGGAAGUUGUGAUCAGUUGAUUGAAACAUCACUUUGCCUUGAUCACCUGAGCAGU .(((((....)))))......(((((((..(((((((.((.....)).......(((((((.(((.(((((....))))).))).)).)))))..)))))))..))))))). ( -28.50) >DroSec_CAF1 29214 87 + 1 CCAAAGAAAUUUUUGAAAACUCUGCUCAUAUGAUCAAAGAAGUUAUCC---------------------CCAGUUGAUUGA----UCAUUUUGCCUUGGUCACCUGAGCAGU .(((((....)))))......(((((((..(((((((.(((((.(((.---------------------..........))----).)))))...)))))))..))))))). ( -20.90) >DroSim_CAF1 30379 91 + 1 CCAAAGAAAUUUUUGAAAACUCUGCUCAUAUGAUCAAAGAAGUUAUCC---------------------CCAGUUGAUUGAAACGUAAUUUUGCCUUGGUCACCUGAGCAGU .(((((....)))))......(((((((..(((((((.((((((((..---------------------...(((......)))))))))))...)))))))..))))))). ( -23.10) >DroEre_CAF1 30178 88 + 1 CCAAAGAAAUUUUUGAAAACGCAGCUCACUUGAUCAAA---GUGCUCC---------------------GCAGUAGAUUGAAACAUGACUUUGCCUUGAUCACCUGAGCAGU .(((((....)))))........(((((..(((((((.---(.((...---------------------.((((........)).)).....))))))))))..)))))... ( -18.90) >DroYak_CAF1 29456 87 + 1 CCAAAGAAAUUUUCGAAAAACCAGCUUAUUUGAUCAAA---GUGAUCC---------------------ACAGUAGAUUAAGAGAUGAUUUUGCCUUGAUCACCUGAG-AGA ..........((((.................((((...---..)))).---------------------.(((..(((((((.((.....))..)))))))..))).)-))) ( -13.50) >consensus CCAAAGAAAUUUUUGAAAACUCUGCUCAUAUGAUCAAAGAAGUUAUCC_____________________CCAGUUGAUUGAAACAUCAUUUUGCCUUGAUCACCUGAGCAGU .....................(((((((..(((((((..........................................................)))))))..))))))). (-12.72 = -12.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:07 2006