| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,158,687 – 17,158,807 |
| Length | 120 |
| Max. P | 0.513548 |
| Location | 17,158,687 – 17,158,807 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.28 |
| Mean single sequence MFE | -47.73 |
| Consensus MFE | -39.96 |
| Energy contribution | -39.97 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.84 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17158687 120 + 20766785 GAGUACAGUUGGCCGGGUUGGCUGCACUCGCGCAUGGUCUGUGUCUCGGUAAUUUUGGCAGUUUUGGGACCAACGUUCGCCUGAAGUGCCACAGUCAUUGAGACAGUGCGCUGAUUCUGG ((((.((((..((...))..)))).))))((((((......(((((((((.(((.(((((.(((.((((.......)).)).))).))))).))).)))))))))))))))......... ( -47.50) >DroPse_CAF1 40091 120 + 1 GAGUAGAGUUGGCCGGGGCGGGUGCAGUCGCGCAGGGUCUGCGUCUCGGUGACCUUGGCCACUUUGGGGCCGACGUUGCCCUUGAGGGCGACGGUGACCGUGAUGACGCGCUCGUUCAGA ...............((((((((((.(((..((((...))))(((.((((.(((((((((.(....))))))).(((((((....)))))))))).)))).))))))))))))))))... ( -60.50) >DroSec_CAF1 25883 120 + 1 GAGUACAGUUGACCGGGUUGGCUGCACUCGCGCAUGGUCUGUGUCUCGGUAAUUUUGGCAGUUUUGGGACCAACGUUCGCCUGAAGUGUCACAGUCAUCGAGACAGUGCGCUGAUUUUGG ((((.((((..((...))..)))).))))((((((......(((((((((.(((.(((((.(((.((((.......)).)).))).))))).))).)))))))))))))))......... ( -46.50) >DroSim_CAF1 27033 120 + 1 GAGUACAGUUGGCCGGGUUGGCUGCACUCGCGCAUGGUCUGUGUCUCGGUAAUUUUGGCAGUUUUGGGACCAACGUUCGCCUGAAGUGUCACAGUCAUCGAGACAGUGCGCUGAUUUUGG ((((.((((..((...))..)))).))))((((((......(((((((((.(((.(((((.(((.((((.......)).)).))).))))).))).)))))))))))))))......... ( -46.80) >DroEre_CAF1 26921 120 + 1 GAGUACAGUUGGCCGGGUUCGCUGCACUCGCGCAUGGUCUGUGUCUCGGUAACCUUGGCAAUUUUGGGACCAACGUUCGCCUGGAGUGCCACAGUCAUCGAGACAGUACGCUGAUUCUGG ((((.((((.(((((....(((.......)))..)))))..(((((((((.((..(((((.(((..((.(........)))..))))))))..)).)))))))))....))))))))... ( -42.80) >DroYak_CAF1 26134 120 + 1 GAAUAUAGUUGGCCGGGUUCGCUGCACUCGAGCAUGGUCUGUGUUUCGGUAACCUUGGCAAUUUUGGGGCCAACAUUCGCCUGGAGUGCCACAGUCAUCGAGACAGUGCGCUGAUUCUGG ((((.((((.(((((.(((((.......))))).)))))..(((((((((.((..(((((...((.((((........)))).)).)))))..)).)))))))))....))))))))... ( -42.30) >consensus GAGUACAGUUGGCCGGGUUGGCUGCACUCGCGCAUGGUCUGUGUCUCGGUAACCUUGGCAAUUUUGGGACCAACGUUCGCCUGAAGUGCCACAGUCAUCGAGACAGUGCGCUGAUUCUGG ((((.((((((((...)))))))).))))((((((......(((((((((.(((.(((((.(((..((...........))..)))))))).))).)))))))))))))))......... (-39.96 = -39.97 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:04 2006