Locus 528

Sequence ID 2R_DroMel_CAF1
Location 2,814,829 – 2,814,933
Length 104
Max. P 0.582439
window992

overview

Window 2

Location 2,814,829 – 2,814,933
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 86.38
Mean single sequence MFE -31.98
Consensus MFE -22.05
Energy contribution -22.30
Covariance contribution 0.25
Combinations/Pair 1.18
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.10
SVM RNA-class probability 0.582439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2814829 104 + 20766785
CCAGCGAAGGUGUCAAUUCGAAAGAUACUAUAUCAUCGAAGAGGAUUUCGGCACUUGUGAUGUUCUGAUGCGGACUAACACCUCUGCAAUAUGAAUAUGCAUGG
(((((..(((((((..(((((..((((...)))).)))))(((...))))))))))...((((((((.((((((........)))))).)).)))))))).))) ( -26.90)
>DroSec_CAF1 4293 103 + 1
CCAGCGGAGGUGUCAAUUCGAAAGAUACUAAAGCUACGAGGAGGAUUGCGGCACUUGUGAUGUUCUGAUGCGGGCUAACACCUCUGCAAUAUGAAUAUU-AUGG
...((((((((((....((....))......((((.((.((((.((..((.....))..)).))))....)))))).))))))))))............-.... ( -33.40)
>DroSim_CAF1 3780 104 + 1
CCAGCGGAGGUGUCAAUUCGAAAGAUACCAUAGCUACGAGGAGGAUUGCGGCACUUGUGAAGUUCUGAUGCGGGCUAACACCUCUGCAGUAUGAAUAUUCAUGG
...((((((((((....((....)).....(((((.((.((((..(..((.....))..)..))))....)))))))))))))))))..(((((....))))). ( -33.00)
>DroEre_CAF1 4143 98 + 1
CCAGCGGAGGUGUCAAGUCCAAAGAUACCA------GGAGGUGGAUUGCGGCACUUGGGAUGUUCUGAUGCGGACCAACGCCUCCGUAGUAUGAAUAUCCAUGG
(((....(((((((.(((((......(((.------...))))))))..))))))).((((((((...((((((........))))))....)))))))).))) ( -34.60)
>consensus
CCAGCGGAGGUGUCAAUUCGAAAGAUACCAUAGCUACGAGGAGGAUUGCGGCACUUGUGAUGUUCUGAUGCGGACUAACACCUCUGCAAUAUGAAUAUUCAUGG
...((((((((((....((....))...........((.((((.((..((.....))..)).))))....)).....))))))))))................. (-22.05 = -22.30 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:58 2006