| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,158,529 – 17,158,647 |
| Length | 118 |
| Max. P | 0.531372 |
| Location | 17,158,529 – 17,158,647 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -41.23 |
| Consensus MFE | -27.48 |
| Energy contribution | -26.68 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17158529 118 - 20766785 GACACCUUCGUCGUCCUGAUGCACUUCUGCCUGAAGGCCACCGUGGAAGAGCACACGGACGUUUUGGUCUUUGCCGAGAUCCAGUUUCUCAAGUCCGUGUGGGCAGUGGUCAAGACCU (((......)))((((((.(((.((((((((....)))......))))).))))).)))).....((((((.(((((((.......))))..((((....))))...))).)))))). ( -43.70) >DroSec_CAF1 25725 118 - 1 GACACCUUCGUCGUCCUGAUGCACUUCUGCCUGAAGGCCACCGUGGAAGAGCACACAGACGUUUUGGUCUUUGCCCAGAUUCAGUUUCUCAAGUCCGUGUGGGCAGUGGUCAAGACCU (((......)))(((.((.(((.((((((((....)))......))))).)))..)))))((((((..(.(((((((.((................)).))))))).)..)))))).. ( -37.89) >DroEre_CAF1 26763 118 - 1 GACACCUUCGUCGUUCUGAUGCACUUCUGCCUGAAGGCCACCGUGGAAGAGCAGACGGACGUUUUGAUCUUCGCCCAGAUCCAGUUUCUCAAGUCUGUGUGGGCGGUGGUUAGGACCU ......(((((((((((....(((....(((....)))....)))..))))).)))))).(((((((((.(((((((.(..(((..........)))).))))))).))))))))).. ( -40.40) >DroWil_CAF1 54743 118 - 1 GAUGCUUUUAAUGUCGAAAUGCAUUUUUGUAUGAAGUGCACAGUGGAAAAUCAUACGGACGUUGUGAUCUUUGCCCAGGUGAAAUUCAUCAAGUCUGUGUGGGCUGUGAUUAAGACAU ..........(((((.....(((((((.....)))))))(((((......((((((((((...((((..((..(....)..))..))))...)))))))))))))))......))))) ( -36.70) >DroYak_CAF1 25976 118 - 1 GACACCUUCGUCGUCCUGAUGCACUUCUGCCUGAAGGCCACAGUGGAGGAGCACACGGACGUUUUGAUCUUCGCCCAGAUCCAGUUUCUCAAGUCCGUGUGGGCGGUGGUCAAGGCCU (((......)))((((((.(((.((((((((....)))......))))).))))).))))(((((((((.(((((((.((................)).))))))).))))))))).. ( -44.09) >DroAna_CAF1 30577 118 - 1 GAUACCUUCGAGGUGCACAUUCACUACUGCCUGAGGGCAGCGGUGGACGAUCAGACCGACGUGCUUAUUUUCGCCCAGAUCAGGUUCGUGAAGUCCGUCUGGGCGGUGGUAAAGGCAU ...(((.....)))((((.(((((..(((((....)))))..)))))((.......))..))))((((..((((((((((..((..(.....).))))))))))))..))))...... ( -44.60) >consensus GACACCUUCGUCGUCCUGAUGCACUUCUGCCUGAAGGCCACCGUGGAAGAGCACACGGACGUUUUGAUCUUCGCCCAGAUCCAGUUUCUCAAGUCCGUGUGGGCGGUGGUCAAGACCU ............(((....(((.((((..(............)..)))).)))....)))(((((((((.(((((((.((..(.((....)).)..)).))))))).))))))))).. (-27.48 = -26.68 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:03 2006