| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,154,980 – 17,155,077 |
| Length | 97 |
| Max. P | 0.629586 |
| Location | 17,154,980 – 17,155,077 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -23.97 |
| Consensus MFE | -16.11 |
| Energy contribution | -16.20 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.629586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17154980 97 - 20766785 AUUUUGUUGAAAUUCAAAACAGGGCAGCAGAC--AGACACCCAUAC-UAAACAAAAAGGAGGCCUGCCUUUGUUUGUUUGGAUCCCCCCAAUCCCCGAU--C----- .(((((........)))))..(((...(((((--(((((......(-(........))((((....))))))))))))))...))).............--.----- ( -19.00) >DroSec_CAF1 22192 98 - 1 AUUUUGCUGAAAUUCAAAAGAGGGCAGCAGACACAGACACCCAUAC-UAAACAAAAAGGAGGCCUGCCUUUGUUUGUUUGGAUCCCCCCCAUCCCCG-U--C----- ..(((((((...(((....)))..)))))))..............(-((((((((...((((....))))..)))))))))................-.--.----- ( -23.40) >DroSim_CAF1 22640 97 - 1 AUUUUGCUGAAAUUCAAAAGAGGGCAGCAGACACAGGCACCCAUAC-UAAACAAAAAGGAGGCCUGCCUUUGUUUGUUUGGAUCCC-CCCAUCCCCG-U--C----- .(((((........)))))..(((.(((((((((((((..((....-..........))..)))))....))))))))(((.....-.)))..))).-.--.----- ( -23.74) >DroEre_CAF1 23323 95 - 1 AUUCUGUUGAAAUUCAAAUGAGAGCAGCAGA------CACCCAUACCCAAACAAAAAGGAGGCCUGCCCUUGUUUGUUUGGACCCC-CCGAUCCCCGAUGUC----- ..(((((((...(((....)))..)))))))------.........(((((((((.(((.((....))))).))))))))).....-...............----- ( -24.60) >DroYak_CAF1 22361 92 - 1 AUUUUGCUGAAAUUGAAAUGAGAGCAGCAGA------CACCCAUAC-CAAACAAAAAGGAGGCCUGCCUUUGUUUGUUUGGACCCC-CCGAUCUCCGAU--U----- ..(((((((...((.....))...)))))))------........(-((((((((...((((....))))..))))))))).....-............--.----- ( -23.50) >DroAna_CAF1 27147 97 - 1 ----UGGUGGUAUUCAAAUGGG--CUCCUAUCGGGCGCACCAAUAC-CAAAUAAAAAGGAGGCCUGCCUUUGUUUGUUUGGACUCCCUCCCUACCAG-U--CUCCCU ----((((((........((((--(.((.....)).)).)))...(-((((((((...((((....))))..))))))))).........)))))).-.--...... ( -29.60) >consensus AUUUUGCUGAAAUUCAAAAGAGGGCAGCAGAC__AG_CACCCAUAC_CAAACAAAAAGGAGGCCUGCCUUUGUUUGUUUGGACCCC_CCCAUCCCCG_U__C_____ ..(((((((...(((....)))..)))))))................((((((((...((((....))))..))))))))........................... (-16.11 = -16.20 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:00 2006