Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 17,147,592 – 17,147,692 |
Length | 100 |
Max. P | 0.616653 |
Location | 17,147,592 – 17,147,692 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 77.94 |
Mean single sequence MFE | -20.63 |
Consensus MFE | -14.64 |
Energy contribution | -15.53 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.07 |
Mean z-score | -1.43 |
Structure conservation index | 0.71 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616653 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17147592 100 + 20766785 UGAGUGGAUGAACUCAAGGAAAGGAAAGGAUUGUAUUUCAUGGAUUGCGUUCUCUAUUCUCUUUAUUCAUUGAAGACUACAACAUUUUUCCGAUCGCUUU (((((......)))))..((..(((((((.(((((....(((((........)))))..((((((.....)))))).)))))..)))))))..))..... ( -19.80) >DroSec_CAF1 14913 81 + 1 UGAAUGC--------------UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC-----UUGUUAUUCAUUGGAGACUACAACAUUUUUCCCAUUGCUUU .....((--------------.(((((((.((((((((((((((((((((....-----)))))))))))..)))).)))))..)))))))....))... ( -21.20) >DroSim_CAF1 15232 81 + 1 UGAAUGC--------------UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC-----UUGUUAUUCAUUGGAGACUACAACAUAUUUCCCAUUGCUUU .....((--------------.(((((.(.((((((((((((((((((((....-----)))))))))))..)))).))))))...)))))....))... ( -20.90) >consensus UGAAUGC______________UGGAAAGGAUUGUAUUUCAUGGAUGGCGAGCUC_____UUGUUAUUCAUUGGAGACUACAACAUUUUUCCCAUUGCUUU ......................(((((((.((((((((((((((((((((.........)))))))))).)))))..)))))..)))))))......... (-14.64 = -15.53 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:57 2006