Locus 5274

Sequence ID 2R_DroMel_CAF1
Location 17,144,643 – 17,144,743
Length 100
Max. P 0.955392
window8431

overview

Window 1

Location 17,144,643 – 17,144,743
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 85.39
Mean single sequence MFE -47.55
Consensus MFE -40.46
Energy contribution -41.60
Covariance contribution 1.14
Combinations/Pair 1.14
Mean z-score -2.76
Structure conservation index 0.85
SVM decision value 1.45
SVM RNA-class probability 0.955392
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 17144643 100 - 20766785
CAACUGGCGAGAGUUGGCUGCGGCCAGCUUGCUGCUGGUCGUUGAUCCAGCGGCAGGUGGUUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU----
...(..((....))..)(((((((((((((((((((((........))))))))))))......)))))))))((((((((.(......)..))))))))---- ( -49.80)
>DroSec_CAF1 11958 100 - 1
CAGCUGGCGAGAGUUGGCUGCGGCCAGCUUGCUGCUGGUCGUUGAUCCAGCGGCGGGUGGUUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU----
(((((((.(.((.(((((((((((((.(..((..((.(((((((...))))))).))..)).).)))))))))....))))..)).).))))))).....---- ( -52.50)
>DroSim_CAF1 12266 100 - 1
CAGCUGGCGAGAGUUGGCUGCGGCCAGCUUGCUGCUGGUCGUUGAUCCAGCGGCGGGUGGUUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU----
(((((((.(.((.(((((((((((((.(..((..((.(((((((...))))))).))..)).).)))))))))....))))..)).).))))))).....---- ( -52.50)
>DroEre_CAF1 12349 100 - 1
CAGCUGGCGCGAAUUGGCUGCGGCCAGCUUGCUACUGAUCGUUGAACCAGCGGUAGGGGGCUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU----
(((((((.(.((.(((((((((((((.(..((..((.(((((((...))))))).))..)).).)))))))))....))))..)).).))))))).....---- ( -47.60)
>DroYak_CAF1 11864 100 - 1
CAGUUGGCGAGAGUUGGCUGCGGCCAGCUUGCUACUGAUCGUUGAUCCAGCGGUAGGGGGCUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU----
(((((((.(.((.(((((((((((((.(..((..((.(((((((...))))))).))..)).).)))))))))....))))..)).).))))))).....---- ( -45.10)
>DroAna_CAF1 17988 98 - 1
CAAUUGGCGAGAGUUCGCCGCCGCCAGCUUGCUGUUGAUGGCCGGACCGGCA------GGUUGGUGGUCACACGGCUCAAGAGUAACACCGGCAGUGACUGCAA
.....((((......))))((((((((((((((((((.....)))..)))))------))))))))(((((.(((.............)))...))))).)).. ( -37.82)
>consensus
CAGCUGGCGAGAGUUGGCUGCGGCCAGCUUGCUGCUGAUCGUUGAUCCAGCGGCAGGUGGUUGGUGGUCGCAGGGUUCCAGAGUCACACCGGCUGGAAUU____
(((((((.(.((.(((((((((((((.(..((..((.(((((((...))))))).))..)).).)))))))))....))))..)).).)))))))......... (-40.46 = -41.60 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:56 2006