| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 17,134,265 – 17,134,374 |
| Length | 109 |
| Max. P | 0.557269 |
| Location | 17,134,265 – 17,134,374 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -20.89 |
| Energy contribution | -20.83 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.557269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 17134265 109 + 20766785 UUUGAAGUAUCUGGCUUCCCUUCUUUGCCACAAGAAGUUUGCUUUAGAGUUCAUUUCACACGGUGGACUGGAGGUCAGUAAAUGGUCUUGUAGAGGGAA----UGUAAUUAUU ...(((((.....)))))((((((.....((((((.(((((((...((.(((..(((((...)))))...))).)))))))))..))))))))))))..----.......... ( -28.80) >DroPse_CAF1 12778 109 + 1 GCUCAAGUACUUGGCCUCCCUGCUUUGCCACAAGAAAUUCGCUCUGGAGUUUAUAUCCCACGGCGGCCUGGAGGUAAGUGAAUU----UGAGGGGGGAAACUCUGGAAAAAUC .((((((((((((.(((((..(((..(((...(((.......)))(((.......)))...))))))..))))))))))..)))----))))((((....))))......... ( -35.50) >DroSec_CAF1 1556 107 + 1 UUUGAAGUAUCUGGCUUCCCUUCUUUGCCACAAGAAGUUUGCUUUAGAGUUUAUUUCCAACGGUGGAUUGGAGGUCAGUAAAUGGUCUUGUA--GGGAA----CGUAAUUAUU .....((((....((((((((........((((((.(((((((...((.(((...((((....))))...))).)))))))))..)))))))--)))))----.))...)))) ( -26.40) >DroEre_CAF1 2255 107 + 1 UUUAAAGUAUCUGGCUUCCCUUCUUUGCCACAAGAAGUUUGCUUUAGAGUUCAUUGCACACGGUGGACUGGAGGUCAGUGAAUUGUCAUGCA--AGGAG----AGCCAUUAUU ...........((((((((((((((......)))))).((((...(.(((((((((.((.(((....)))...))))))))))).)...)))--)))).----)))))..... ( -31.20) >DroYak_CAF1 1784 107 + 1 UUUAAAGUAUCUGGCUUCCCUUCUUUGCCACAAGAAGUUUGCUUUAGAGUUUAUUGCACACGGUGGUCUGGAGGUCAGUAAAUUGUCCAGCA--AGGAA----UGACAUUAUU ......((..(((((((((.......(((((.....((.(((..(((...)))..))).)).)))))..))))))))).......(((....--.))).----..))...... ( -23.80) >DroPer_CAF1 13873 109 + 1 GCUCAAGUACUUGGCCUCCCUGCUUUGCCACAAGAAAUUCGCUCUGGAGUUUAUAUCCCACGGCGGCCUGGAGGUAAGUGAAUU----UGAGGGGGGAAACUCUGGAAAAAUC .((((((((((((.(((((..(((..(((...(((.......)))(((.......)))...))))))..))))))))))..)))----))))((((....))))......... ( -35.50) >consensus UUUAAAGUAUCUGGCUUCCCUUCUUUGCCACAAGAAGUUUGCUUUAGAGUUUAUUUCACACGGUGGACUGGAGGUCAGUAAAUUGUC_UGAA__GGGAA____UGGAAUUAUU ..........(((((((((..(((..(((....(((((..(((....)))..)))))....))))))..)))))))))................................... (-20.89 = -20.83 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:55 2006